C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox A3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105997 HOXA3 9606 - 7:27106184-27152581 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000317201 HOXA3-002 27107012-27140219 protein_coding
  ENST00000396352 HOXA3-001 27106184-27119595 protein_coding
  ENST00000518451 HOXA3-008 27126928-27152581 processed_transcript
  ENST00000521401 HOXA3-006 27110691-27140225 processed_transcript
  ENST00000522456 HOXA3-004 27110479-27113845 protein_coding
  ENST00000522788 HOXA3-005 27110388-27140206 protein_coding
  ENST00000612286 HOXA3-201 27106190-27127020 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000317201ENST00000396352
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000317201 3.100±0.00 4.066±0.00 4.592±0.00 2.434±0.00 0.207±0.00 N/A 0.052±0.00 3.508±0.00 0.827±0.39 2.018±1.69 0.245±0.00 3.441±0.00
ENST00000396352 N/A N/A N/A N/A N/A 4.693±0.00 N/A N/A N/A 1.041±0.21 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001525 IEP angiogenesis
GO:0001974 IEA blood vessel remodeling
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008284 IEA positive regulation of cell proliferation
GO:0009887 IEA organ morphogenesis
GO:0009952 IEA anterior/posterior pattern specification
GO:0010159 IEA specification of organ position
GO:0021615 IEA glossopharyngeal nerve morphogenesis
GO:0030878 IEA thyroid gland development
GO:0043565 IEA sequence-specific DNA binding
GO:0048538 IEA thymus development
GO:0048645 IEA organ formation
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048706 IEA embryonic skeletal system development
GO:0051216 IEA cartilage development
GO:0060017 IEA parathyroid gland development
GO:0071837 IEA HMG box domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000079560 Hoxa3 homeobox A3 protein_coding Mus_musculus

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