C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox A3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000079560 Hoxa3 10090 - 6:52169062-52213336 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000114434 Hoxa3-001 52169062-52213115 protein_coding
  ENSMUST00000134831 Hoxa3-004 52172571-52183855 protein_coding
  ENSMUST00000142764 Hoxa3-003 52199151-52213336 retained_intron
  ENSMUST00000148446 Hoxa3-002 52180560-52184874 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114434
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114434 1.072±0.00 2.324±0.28 3.416±0.00 0.626±0.00 2.427±0.00 5.590±0.60 0.254±0.07 4.184±0.92 0.346±0.20 3.996±1.39 1.313±0.11 3.190±1.16 0.381±0.20 2.564±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008V2 CIL_0008V2_0002 VISTA 6:51578612-52179694
CIL_0008QL CIL_0008QL_0002 VISTA 6:51878169-52478777
CIL_000911 CIL_000911_0002 VISTA 6:51970433-52571615
CIL_000811 CIL_000811_0002 VISTA 6:52019082-52620287
CIL_00097P CIL_00097P_0002 VISTA 6:52142617-52744529

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0001974 IMP blood vessel remodeling
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008284 IMP positive regulation of cell proliferation
GO:0009887 IMP organ morphogenesis
GO:0009952 IGI anterior/posterior pattern specification
GO:0010159 IGI specification of organ position
GO:0021615 IGI glossopharyngeal nerve morphogenesis
GO:0030878 IMP thyroid gland development
GO:0043565 IEA sequence-specific DNA binding
GO:0048538 IGI thymus development
GO:0048645 IMP organ formation
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048706 IGI embryonic skeletal system development
GO:0051216 IGI cartilage development
GO:0060017 IGI parathyroid gland development
GO:0071837 IPI HMG box domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000105997 HOXA3 homeobox A3 protein_coding Homo_sapiens

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