C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: neuronal pentraxin II
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000106236 NPTX2 9606 + 7:98617297-98629868 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265634 NPTX2-001 98617297-98629868 protein_coding
  ENST00000466102 NPTX2-002 98619667-98627253 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265634
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265634 15.437±0.00 1.177±0.00 13.042±3.14 0.238±0.02 4.741±4.48 2.141±2.01 0.811±0.00 0.287±0.11 0.197±0.09 1.282±1.25 11.077±16.25 0.345±0.16 49.687±22.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00053A CIL_00053A_0001 CGP 7:98291651-98629868
CIL_0004TN CIL_0004TN_0001 CGP 7:98617297-98870771

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005576 IEA extracellular region
GO:0007268 NAS synaptic transmission
GO:0030246 IEA carbohydrate binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037794 nptx2a neuronal pentraxin 2a protein_coding Danio_rerio
ENSDARG00000045164 nptx2b neuronal pentraxin 2b protein_coding Danio_rerio
ENSMUSG00000059991 Nptx2 neuronal pentraxin 2 protein_coding Mus_musculus

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