C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000106266 SNX8 9606 - 7:2251770-2354318 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000222990 SNX8-001 2251770-2314464 protein_coding
  ENST00000419693 SNX8-005 2278114-2307950 protein_coding
  ENST00000435060 SNX8-004 2264366-2309946 protein_coding
  ENST00000435336 SNX8-002 2264440-2354309 protein_coding
  ENST00000447136 SNX8-003 2275116-2354318 protein_coding
  ENST00000457286 SNX8-006 2264393-2299437 protein_coding
  ENST00000479689 SNX8-008 2257666-2271896 retained_intron
  ENST00000480807 SNX8-009 2255040-2257618 retained_intron
  ENST00000494722 SNX8-007 2274960-2314441 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000222990ENST00000435060ENST00000435336ENST00000479689ENST00000480807ENST00000494722
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000222990 5.932±0.00 7.840±0.00 N/A 3.494±3.05 4.771±0.00 1.731±1.22 1.465±1.27 6.380±0.00 2.435±2.29 0.515±0.16 4.887±0.00 5.787±2.84 5.679±1.91 4.559±2.25
ENST00000435060 N/A N/A N/A N/A N/A N/A N/A 1.228±0.00 N/A N/A N/A N/A N/A N/A
ENST00000435336 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.886±0.00 N/A N/A N/A N/A
ENST00000479689 N/A N/A 6.627±0.00 N/A N/A N/A 2.399±0.00 1.865±0.00 1.109±0.00 2.106±0.22 N/A 17.475±10.23 17.666±0.00 19.477±0.00
ENST00000480807 18.347±0.00 32.549±0.00 N/A N/A 13.825±0.00 N/A N/A N/A 10.338±0.00 5.788±0.00 N/A N/A 12.122±2.96 13.788±3.08
ENST00000494722 N/A N/A N/A 1.403±0.00 N/A N/A N/A N/A N/A N/A 5.461±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000ZO CIL_0000ZO_0001 CGP 7:2242222-2354318
CIL_0000ZL CIL_0000ZL_0001 CGP 7:2251770-2380745

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0006886 IEA:IMP intracellular protein transport
GO:0030904 IDA retromer complex
GO:0031901 IEA:IDA early endosome membrane
GO:0034498 IEA:IMP early endosome to Golgi transport
GO:0035091 IEA:IMP phosphatidylinositol binding
GO:0042802 IPI identical protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074842 snx8a sorting nexin 8a protein_coding Danio_rerio
ENSDARG00000077708 snx8b sorting nexin 8b protein_coding Danio_rerio
ENSDARG00000078057 snx8b sorting nexin 8b protein_coding Danio_rerio
ENSMUSG00000029560 Snx8 sorting nexin 8 protein_coding Mus_musculus

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