C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000106392 C1GALT1 9606 + 7:7156934-7248651 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000223122 C1GALT1-001 7234258-7248651 protein_coding
  ENST00000402468 C1GALT1-003 7234320-7238964 protein_coding
  ENST00000419721 C1GALT1-004 7182547-7238334 protein_coding
  ENST00000429911 C1GALT1-006 7156934-7238428 protein_coding
  ENST00000436587 C1GALT1-201 7182615-7248647 protein_coding
  ENST00000467716 C1GALT1-005 7182625-7210567 processed_transcript
  ENST00000476068 C1GALT1-002 7182630-7235297 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000223122ENST00000402468ENST00000436587
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000223122 N/A N/A 1.942±0.00 3.006±0.00 4.312±0.00 3.222±0.00 0.685±0.00 1.576±0.90 0.862±0.65 2.500±0.00 0.508±0.00 4.695±0.00 3.633±0.00 0.386±0.00
ENST00000402468 1.459±0.00 3.981±0.00 N/A 3.405±0.00 3.823±0.87 2.189±0.00 0.867±0.00 6.495±0.00 N/A 4.423±0.00 N/A 10.952±2.46 17.948±0.00 4.543±2.44
ENST00000436587 1.468±0.00 2.261±0.00 N/A 3.253±0.00 1.945±0.00 0.883±0.00 1.236±1.09 3.216±0.00 1.021±0.23 2.299±0.00 1.555±0.00 1.973±0.92 2.635±1.18 1.220±0.02

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0001525 IMP angiogenesis
GO:0001822 IMP kidney development
GO:0005515 IPI protein binding
GO:0006486 IEA protein glycosylation
GO:0006493 IEA protein O-linked glycosylation
GO:0008378 IEA galactosyltransferase activity
GO:0016020 IEA membrane
GO:0016021 IDA integral component of membrane
GO:0016263 IEA:IDA glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity
GO:0016266 IEA:TAS O-glycan processing
GO:0016757 IEA transferase activity, transferring glycosyl groups
GO:0030154 IEA cell differentiation
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0046872 IEA metal ion binding
GO:0060576 IEA intestinal epithelial cell development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062278 C1GALT1 (1 of 2) core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein_coding Danio_rerio
ENSDARG00000074025 C1GALT1 (2 of 2) core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein_coding Danio_rerio
ENSMUSG00000042460 C1galt1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 protein_coding Mus_musculus

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