C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spindlin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000106723 SPIN1 9606 + 9:88388419-88478694 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000375859 SPIN1-001 88388419-88478694 protein_coding
  ENST00000462844 SPIN1-005 88388444-88462638 processed_transcript
  ENST00000469017 SPIN1-004 88388431-88475914 processed_transcript
  ENST00000483785 SPIN1-002 88389371-88468477 processed_transcript
  ENST00000485565 SPIN1-006 88388452-88475203 processed_transcript
  ENST00000485804 SPIN1-003 88388430-88475245 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000375859ENST00000469017ENST00000483785ENST00000485804
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000375859 12.022±0.00 3.047±0.00 21.291±1.57 3.652±0.00 10.509±5.38 1.647±0.63 0.514±0.00 2.189±0.57 6.970±0.00 N/A 16.483±10.87 13.702±7.47 21.144±1.42
ENST00000469017 N/A N/A N/A N/A N/A N/A 1.383±0.00 N/A N/A N/A N/A N/A N/A
ENST00000483785 N/A 8.203±0.00 N/A N/A N/A N/A N/A N/A N/A 1.381±0.00 N/A N/A N/A
ENST00000485804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 30.426±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000078 CIL_000078_0002 CGP 9:88388419-88584274

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005819 IEA spindle
GO:0007275 IEA multicellular organismal development
GO:0007276 IEA gamete generation
GO:0009303 IDA rRNA transcription
GO:0016055 IEA Wnt signaling pathway
GO:0016568 IEA chromatin modification
GO:0030177 IDA positive regulation of Wnt signaling pathway
GO:0035064 IDA methylated histone binding
GO:0051321 IEA meiotic cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035697 protein_coding Danio_rerio
ENSDARG00000058949 SPIN1 protein_coding Danio_rerio
ENSMUSG00000021395 Spin1 spindlin 1 protein_coding Mus_musculus

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