C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tyrosinase-related protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000107165 TYRP1 9606 + 9:12685439-12710290 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000381136 TYRP1-002 12695720-12709235 protein_coding
  ENST00000381142 TYRP1-008 12698506-12709267 processed_transcript
  ENST00000388918 TYRP1-001 12693435-12710290 protein_coding
  ENST00000459790 TYRP1-006 12693309-12694487 retained_intron
  ENST00000470909 TYRP1-003 12701645-12702442 processed_transcript
  ENST00000473504 TYRP1-004 12707671-12709294 processed_transcript
  ENST00000473763 TYRP1-005 12685439-12694303 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000381136ENST00000381142ENST00000388918ENST00000470909ENST00000473504ENST00000473763
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000381136 N/A N/A N/A N/A N/A 4.813±3.24 1.117±0.00 N/A 0.449±0.00 N/A N/A N/A N/A
ENST00000381142 0.039±0.00 N/A 1.002±0.00 N/A 0.085±0.00 4.678±2.73 0.089±0.00 N/A 0.641±0.00 1.093±0.90 0.328±0.11 0.074±0.02 0.068±0.00
ENST00000388918 0.010±0.00 1.077±0.00 0.620±0.19 0.282±0.27 N/A 3.388±2.25 0.549±0.00 N/A 0.259±0.00 N/A 0.070±0.04 0.019±0.00 0.130±0.00
ENST00000470909 0.087±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.180±0.00 N/A
ENST00000473504 N/A N/A N/A N/A N/A N/A N/A 0.332±0.00 N/A N/A 0.066±0.00 N/A N/A
ENST00000473763 N/A N/A N/A N/A 0.612±0.00 N/A N/A N/A N/A N/A N/A 0.076±0.00 0.289±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UW CIL_0005UW_0002 CGP 9:8314246-12710290
CIL_00012W CIL_00012W_0001 CGP 9:12685439-12822131

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005507 IEA copper ion binding
GO:0005515 IPI protein binding
GO:0006582 IEA melanin metabolic process
GO:0008152 IEA metabolic process
GO:0010008 IDA endosome membrane
GO:0016021 IEA integral component of membrane
GO:0016491 IEA oxidoreductase activity
GO:0016716 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen
GO:0030318 IEA melanocyte differentiation
GO:0030669 IDA clathrin-coated endocytic vesicle membrane
GO:0032438 IEA melanosome organization
GO:0033162 IEA melanosome membrane
GO:0042438 IEA melanin biosynthetic process
GO:0042470 ISS melanosome
GO:0042803 ISS protein homodimerization activity
GO:0043438 IEA acetoacetic acid metabolic process
GO:0043473 IEA pigmentation
GO:0046982 ISS protein heterodimerization activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029204 tyrp1a tyrosinase-related protein 1a protein_coding Danio_rerio
ENSDARG00000056151 tyrp1b tyrosinase-related protein 1b protein_coding Danio_rerio
ENSMUSG00000005994 Tyrp1 tyrosinase-related protein 1 protein_coding Mus_musculus

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