C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: attractin-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000107518 ATRNL1 9606 + 10:115093365-115948992 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355044 ATRNL1-001 115093625-115948992 protein_coding
  ENST00000424738 ATRNL1-004 115467174-115597982 processed_transcript
  ENST00000449616 ATRNL1-007 115909351-115944959 processed_transcript
  ENST00000524503 ATRNL1-008 115171253-115220460 processed_transcript
  ENST00000526373 ATRNL1-010 115300231-115462016 protein_coding
  ENST00000526946 ATRNL1-009 115093371-115160169 protein_coding
  ENST00000527407 ATRNL1-005 115093463-115171327 protein_coding
  ENST00000534530 ATRNL1-011 115301973-115549527 processed_transcript
  ENST00000609571 ATRNL1-002 115093365-115171376 protein_coding
  ENST00000616894 ATRNL1-003 115093365-115171369 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355044ENST00000424738ENST00000526946ENST00000527407ENST00000609571ENST00000616894
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355044 N/A 0.794±0.00 15.694±4.95 0.167±0.00 0.787±0.09 0.120±0.00 0.594±0.00 0.196±0.06 0.043±0.03 N/A 1.353±0.97 0.163±0.04 0.649±0.05
ENST00000424738 0.049±0.00 N/A N/A N/A N/A N/A N/A N/A 0.103±0.00 0.083±0.00 N/A N/A N/A
ENST00000526946 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.181±0.96 6.966±6.92 N/A N/A
ENST00000527407 N/A N/A N/A N/A N/A 0.437±0.00 N/A N/A 0.305±0.00 N/A N/A N/A N/A
ENST00000609571 N/A N/A 77.701±0.00 0.802±0.65 4.947±0.00 0.312±0.00 1.131±0.00 N/A N/A N/A 3.226±0.00 0.840±0.61 4.495±0.41
ENST00000616894 N/A N/A N/A N/A N/A N/A N/A N/A 0.651±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OD CIL_0002OD_0001 CGP 10:114938193-115948992
CIL_0006S7 CIL_0006S7_0001 CGP 10:115093365-116273467

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006420 atrnl1b attractin-like 1b protein_coding Danio_rerio
ENSDARG00000077188 atrnl1a attractin-like 1a protein_coding Danio_rerio
ENSMUSG00000054843 Atrnl1 attractin like 1 protein_coding Mus_musculus

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