C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006S7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000107518-ENSG00000151892 CGP 9606 10:115093365-116273467
GeneTranscriptPositionBiotype
ENSG00000107518 (ATRNL1)
attractin-like 1 		ENST00000355044 (ATRNL1-001) 115093625-115948992 protein_coding
ENST00000424738 (ATRNL1-004) 115467174-115597982 processed_transcript
ENST00000449616 (ATRNL1-007) 115909351-115944959 processed_transcript
ENST00000524503 (ATRNL1-008) 115171253-115220460 processed_transcript
ENST00000526373 (ATRNL1-010) 115300231-115462016 protein_coding
ENST00000526946 (ATRNL1-009) 115093371-115160169 protein_coding
ENST00000527407 (ATRNL1-005) 115093463-115171327 protein_coding
ENST00000534530 (ATRNL1-011) 115301973-115549527 processed_transcript
ENST00000609571 (ATRNL1-002) 115093365-115171376 protein_coding
ENST00000616894 (ATRNL1-003) 115093365-115171369 nonsense_mediated_decay
ENSG00000270965 (RP11-169K19.1)
 ENST00000603150 (RP11-169K19.1-001) 115819842-115820487 processed_pseudogene
CIL_0006S7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000054843-ENSMUSG00000025089 CGP 10090 19:57611034-58455909
GeneTranscriptPositionBiotype
ENSMUSG00000025089 (Gfra1)
glial cell line derived neurotrophic factor family receptor alpha 1 		ENSMUST00000026076 (Gfra1-001) 58235604-58455398 protein_coding
ENSMUST00000123957 (Gfra1-008) 58453421-58454620 protein_coding
ENSMUST00000129100 (Gfra1-004) 58235612-58454592 protein_coding
ENSMUST00000131877 (Gfra1-005) 58453352-58455909 protein_coding
ENSMUST00000135730 (Gfra1-006) 58454324-58455161 protein_coding
ENSMUST00000138530 (Gfra1-007) 58453335-58455006 protein_coding
ENSMUST00000140141 (Gfra1-003) 58238162-58455359 nonsense_mediated_decay
ENSMUST00000152507 (Gfra1-002) 58238162-58455301 protein_coding
ENSMUST00000169850 (Gfra1-201) 58236692-58454466 protein_coding
ENSMUSG00000054843 (Atrnl1)
attractin like 1 		ENSMUST00000077282 (Atrnl1-201) 57611034-58133338 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006S7_0001ENSG00000107518ENST00000355044ENST00000424738ENST00000449616ENST00000524503ENST00000526373ENST00000526946ENST00000527407ENST00000534530ENST00000609571ENST00000616894ENSG00000270965ENST00000603150CIL_0006S7_0002ENSMUSG00000025089ENSMUST00000026076ENSMUST00000123957ENSMUST00000129100ENSMUST00000131877ENSMUST00000135730ENSMUST00000138530ENSMUST00000140141ENSMUST00000152507ENSMUST00000169850ENSMUSG00000054843ENSMUST00000077282
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006S7_0001ENSG00000107518ENST00000355044ENST00000424738ENST00000526946ENST00000527407ENST00000609571ENST00000616894ENSG00000270965ENST00000603150CIL_0006S7_0002ENSMUSG00000025089ENSMUST00000026076ENSMUST00000123957ENSMUST00000129100ENSMUST00000131877ENSMUST00000140141ENSMUST00000152507ENSMUST00000169850ENSMUSG00000054843ENSMUST00000077282
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107518 ENST00000355044 N/A N/A 0.794±0.00 15.694±4.95 0.167±0.00 0.787±0.09 0.120±0.00 0.594±0.00 0.196±0.06 0.043±0.03 N/A 1.353±0.97 0.163±0.04 0.649±0.05
ENST00000424738 0.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.103±0.00 0.083±0.00 N/A N/A N/A
ENST00000449616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526946 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.181±0.96 6.966±6.92 N/A N/A
ENST00000527407 N/A N/A N/A N/A N/A N/A 0.437±0.00 N/A N/A 0.305±0.00 N/A N/A N/A N/A
ENST00000534530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609571 N/A N/A N/A 77.701±0.00 0.802±0.65 4.947±0.00 0.312±0.00 1.131±0.00 N/A N/A N/A 3.226±0.00 0.840±0.61 4.495±0.41
ENST00000616894 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.651±0.00 N/A N/A N/A N/A
ENSG00000270965 ENST00000603150 N/A N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025089 ENSMUST00000026076 N/A N/A 0.481±0.07 5.284±3.24 0.114±0.00 0.198±0.00 0.232±0.09 0.359±0.04 0.994±0.43 0.583±0.21 0.151±0.03 0.305±0.00 0.028±0.00 0.276±0.00
ENSMUST00000123957 N/A 0.585±0.10 N/A N/A 1.054±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129100 0.219±0.12 0.155±0.08 0.937±0.12 4.660±0.00 0.486±0.26 0.322±0.05 0.561±0.23 1.224±0.47 3.285±2.18 1.203±0.00 0.540±0.20 0.373±0.31 0.028±0.01 0.699±0.32
ENSMUST00000131877 N/A N/A N/A N/A N/A 0.778±0.08 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140141 N/A N/A N/A N/A N/A 0.416±0.00 N/A N/A N/A N/A N/A 0.491±0.07 N/A N/A
ENSMUST00000152507 N/A 0.292±0.17 N/A N/A 0.242±0.04 0.550±0.16 N/A 1.115±0.00 N/A 0.623±0.00 N/A 1.868±0.00 0.066±0.00 N/A
ENSMUST00000169850 0.346±0.12 0.152±0.10 0.279±0.00 3.708±2.73 0.549±0.18 0.532±0.16 0.743±0.27 0.931±0.44 3.992±3.10 1.755±0.40 0.114±0.00 1.157±0.67 0.038±0.02 0.187±0.00
ENSMUSG00000054843 ENSMUST00000077282 11.323±4.24 7.016±0.47 4.321±0.50 8.247±1.03 7.876±1.72 23.109±1.16 3.598±0.37 9.105±0.80 2.651±1.35 14.489±0.66 1.416±0.16 12.882±3.01 4.113±1.89 1.463±0.88

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