C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002OD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000165832-ENSG00000107518 CGP 9606 10:114938193-115948992
GeneTranscriptPositionBiotype
ENSG00000107518 (ATRNL1)
attractin-like 1 		ENST00000355044 (ATRNL1-001) 115093625-115948992 protein_coding
ENST00000424738 (ATRNL1-004) 115467174-115597982 processed_transcript
ENST00000449616 (ATRNL1-007) 115909351-115944959 processed_transcript
ENST00000524503 (ATRNL1-008) 115171253-115220460 processed_transcript
ENST00000526373 (ATRNL1-010) 115300231-115462016 protein_coding
ENST00000526946 (ATRNL1-009) 115093371-115160169 protein_coding
ENST00000527407 (ATRNL1-005) 115093463-115171327 protein_coding
ENST00000534530 (ATRNL1-011) 115301973-115549527 processed_transcript
ENST00000609571 (ATRNL1-002) 115093365-115171376 protein_coding
ENST00000616894 (ATRNL1-003) 115093365-115171369 nonsense_mediated_decay
ENSG00000165832 (TRUB1)
TruB pseudouridine (psi) synthase family member 1 		ENST00000298746 (TRUB1-001) 114938193-114977676 protein_coding
ENST00000485065 (TRUB1-002) 114938386-114960000 processed_transcript
ENSG00000236799 (RP11-383C6.2)
 ENST00000433085 (RP11-383C6.2-001) 114994657-114996593 lincRNA
ENSG00000252611 (RNU6-1121P)
RNA, U6 small nuclear 1121, pseudogene 		ENST00000516802 (RNU6-1121P-201) 114969460-114969568 snRNA
ENSG00000270965 (RP11-169K19.1)
 ENST00000603150 (RP11-169K19.1-001) 115819842-115820487 processed_pseudogene
CIL_0002OD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025086-ENSMUSG00000054843 CGP 10090 19:57452906-58133338
GeneTranscriptPositionBiotype
ENSMUSG00000025086 (Trub1)
TruB pseudouridine (psi) synthase homolog 1 (E. coli) 		ENSMUST00000026072 (Trub1-201) 57452906-57488910 protein_coding
ENSMUST00000026073 (Trub1-202) 57452906-57491005 protein_coding
ENSMUSG00000054843 (Atrnl1)
attractin like 1 		ENSMUST00000077282 (Atrnl1-201) 57611034-58133338 protein_coding
ENSMUSG00000097374 (Gm26874)
predicted gene, 26874 		ENSMUST00000181959 (Gm26874-201) 57459572-57461553 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002OD_0001ENSG00000107518ENST00000355044ENST00000424738ENST00000449616ENST00000524503ENST00000526373ENST00000526946ENST00000527407ENST00000534530ENST00000609571ENST00000616894ENSG00000165832ENST00000298746ENST00000485065ENSG00000236799ENST00000433085ENSG00000252611ENST00000516802ENSG00000270965ENST00000603150CIL_0002OD_0002ENSMUSG00000025086ENSMUST00000026072ENSMUST00000026073ENSMUSG00000054843ENSMUST00000077282ENSMUSG00000097374ENSMUST00000181959
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002OD_0001ENSG00000107518ENST00000355044ENST00000424738ENST00000526946ENST00000527407ENST00000609571ENST00000616894ENSG00000165832ENST00000298746ENST00000485065ENSG00000236799ENST00000433085ENSG00000252611ENST00000516802ENSG00000270965ENST00000603150CIL_0002OD_0002ENSMUSG00000025086ENSMUST00000026072ENSMUST00000026073ENSMUSG00000054843ENSMUST00000077282ENSMUSG00000097374ENSMUST00000181959
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107518 ENST00000355044 N/A N/A 0.794±0.00 15.694±4.95 0.167±0.00 0.787±0.09 0.120±0.00 0.594±0.00 0.196±0.06 0.043±0.03 N/A 1.353±0.97 0.163±0.04 0.649±0.05
ENST00000424738 0.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.103±0.00 0.083±0.00 N/A N/A N/A
ENST00000449616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526946 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.181±0.96 6.966±6.92 N/A N/A
ENST00000527407 N/A N/A N/A N/A N/A N/A 0.437±0.00 N/A N/A 0.305±0.00 N/A N/A N/A N/A
ENST00000534530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609571 N/A N/A N/A 77.701±0.00 0.802±0.65 4.947±0.00 0.312±0.00 1.131±0.00 N/A N/A N/A 3.226±0.00 0.840±0.61 4.495±0.41
ENST00000616894 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.651±0.00 N/A N/A N/A N/A
ENSG00000165832 ENST00000298746 1.317±0.00 2.673±0.00 1.560±0.00 7.686±1.77 2.386±0.86 2.342±0.38 3.100±0.17 3.765±1.50 2.705±0.56 1.698±0.74 1.169±0.00 4.945±0.99 1.737±0.16 8.041±1.27
ENST00000485065 N/A N/A 2.188±0.00 N/A N/A N/A N/A 2.922±0.00 N/A N/A N/A 13.290±0.00 6.238±0.00 12.043±0.00
ENSG00000236799 ENST00000433085 N/A N/A N/A 0.206±0.00 N/A N/A 0.136±0.00 N/A N/A N/A N/A 0.338±0.00 N/A 0.420±0.03
ENSG00000252611 ENST00000516802 N/A 0.332±0.00 N/A 0.163±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.300±0.00
ENSG00000270965 ENST00000603150 N/A N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025086 ENSMUST00000026072 1.916±0.60 2.032±0.39 3.936±0.64 3.259±0.66 1.630±0.47 0.961±0.29 0.646±0.09 0.750±0.13 1.713±0.75 1.176±0.05 1.237±0.11 2.498±1.01 1.710±0.43 0.505±0.06
ENSMUST00000026073 2.542±0.80 5.976±0.88 2.447±0.32 3.211±0.87 2.335±1.03 1.840±0.40 0.955±0.06 2.634±0.29 3.062±0.41 1.342±0.13 0.934±0.20 3.578±1.27 1.835±0.60 0.518±0.19
ENSMUSG00000054843 ENSMUST00000077282 11.323±4.24 7.016±0.47 4.321±0.50 8.247±1.03 7.876±1.72 23.109±1.16 3.598±0.37 9.105±0.80 2.651±1.35 14.489±0.66 1.416±0.16 12.882±3.01 4.113±1.89 1.463±0.88
ENSMUSG00000097374 ENSMUST00000181959 0.138±0.10 0.095±0.05 0.021±0.01 0.029±0.01 0.082±0.05 0.042±0.01 0.015±0.00 0.053±0.02 0.060±0.05 0.112±0.05 N/A 0.125±0.09 0.010±0.01 0.048±0.03

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