C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sortilin-related VPS10 domain containing receptor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108018 SORCS1 9606 - 10:106573663-107164534 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263054 SORCS1-001 106573663-107164534 protein_coding
  ENST00000344440 SORCS1-201 106577611-106956583 protein_coding
  ENST00000369698 SORCS1-002 106577182-106699358 protein_coding
  ENST00000452214 SORCS1-004 106577199-106611987 protein_coding
  ENST00000472196 SORCS1-005 106667084-106675089 processed_transcript
  ENST00000473866 SORCS1-003 106577198-106607218 retained_intron
  ENST00000478809 SORCS1-007 106600267-106618274 processed_transcript
  ENST00000486192 SORCS1-006 106620118-106629389 retained_intron
  ENST00000612154 SORCS1-202 106573671-106956583 protein_coding
  ENST00000622431 SORCS1-203 106573671-106956583 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263054ENST00000344440ENST00000369698ENST00000452214ENST00000473866ENST00000478809ENST00000612154ENST00000622431
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263054 N/A N/A N/A 1.242±0.00 0.212±0.00 N/A 0.396±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000344440 N/A N/A N/A 1.264±0.00 N/A N/A N/A N/A N/A 0.087±0.00 0.104±0.00 N/A N/A N/A
ENST00000369698 N/A N/A N/A N/A N/A N/A 0.118±0.00 0.006±0.00 0.730±0.00 N/A N/A N/A N/A N/A
ENST00000452214 N/A N/A N/A N/A 0.161±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.014±0.00 N/A
ENST00000478809 N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A
ENST00000612154 0.094±0.00 0.102±0.00 N/A N/A 0.026±0.00 1.425±0.00 N/A 0.692±0.00 0.297±0.00 N/A N/A 0.214±0.00 0.039±0.00 0.351±0.00
ENST00000622431 N/A N/A 0.266±0.00 1.340±0.50 0.131±0.00 N/A 0.131±0.00 0.012±0.00 0.015±0.00 N/A N/A 0.042±0.04 0.019±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000392 CIL_000392_0002 CGP 10:104641101-107164534

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0007218 NAS neuropeptide signaling pathway
GO:0008188 NAS neuropeptide receptor activity
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076333 SORCS1 sortilin-related VPS10 domain containing receptor 1 protein_coding Danio_rerio
ENSMUSG00000043531 Sorcs1 VPS10 domain receptor protein SORCS 1 protein_coding Mus_musculus

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