C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox B6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108511 HOXB6 9606 - 17:48595751-48604992 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000225648 HOXB6-002 48595753-48604972 protein_coding
  ENST00000470193 HOXB6-003 48596528-48597134 processed_transcript
  ENST00000484302 HOXB6-001 48595751-48604992 protein_coding
  ENST00000490419 HOXB6-004 48598211-48604132 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverOvaryPlacentaENST00000225648ENST00000484302
Transcript ID Brain Heart Kidney Liver Ovary Placenta
ENST00000225648 0.034±0.00 0.294±0.00 22.975±0.00 0.827±0.00 7.146±0.00 3.952±1.95
ENST00000484302 N/A N/A N/A N/A 1.068±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0001 VISTA 17:48304888-48905406

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009952 IEA anterior/posterior pattern specification
GO:0034101 IEA erythrocyte homeostasis
GO:0043565 IEA sequence-specific DNA binding
GO:0044822 IDA poly(A) RNA binding
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048706 IEA embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010630 hoxb6a homeo box B6a protein_coding Danio_rerio
ENSDARG00000026513 hoxb6b homeo box B6b protein_coding Danio_rerio
ENSMUSG00000000690 Hoxb6 homeobox B6 protein_coding Mus_musculus

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