C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox B6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000000690 Hoxb6 10090 + 11:96292476-96301569 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000000704 Hoxb6-201 96299171-96301568 protein_coding
  ENSMUST00000173432 Hoxb6-001 96292476-96301569 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000704ENSMUST00000173432
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000704 5.109±1.49 31.959±4.08 N/A 1.297±1.06 4.724±1.30 2.963±0.77 0.050±0.00 12.081±2.86 0.032±0.02 1.663±0.88 0.352±0.17 4.178±2.03 0.330±0.19 0.476±0.00
ENSMUST00000173432 4.997±3.74 51.146±25.55 4.062±0.30 0.707±0.95 3.487±1.71 5.838±2.20 0.046±0.00 16.561±4.95 0.081±0.06 1.832±0.82 0.293±0.15 10.506±5.23 0.248±0.22 0.911±0.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579
CIL_0000W8 CIL_0000W8_0003 CGP 11:96292476-96306121

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0034101 IMP erythrocyte homeostasis
GO:0043565 IEA sequence-specific DNA binding
GO:0044822 IEA poly(A) RNA binding
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048706 IGI embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010630 hoxb6a homeo box B6a protein_coding Danio_rerio
ENSDARG00000026513 hoxb6b homeo box B6b protein_coding Danio_rerio
ENSG00000108511 HOXB6 homeobox B6 protein_coding Homo_sapiens

Loading