C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000225648 HOXB6-002 ENSG00000108511 9606 - 17:48595753-48604972 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverOvaryPlacentaENST00000225648
Transcript ID Brain Heart Kidney Liver Ovary Placenta
ENST00000225648 0.034±0.00 0.294±0.00 22.975±0.00 0.827±0.00 7.146±0.00 3.952±1.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0001 VISTA 17:48304888-48905406

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000173432 Hoxb6-001 protein_coding Mus_musculus 0 1613
ENSMUST00000000704 Hoxb6-201 protein_coding Mus_musculus 0 1482
ENSMUST00000049241 Hoxb4-001 protein_coding Mus_musculus 3e-35 154
ENSMUST00000142611 Hoxa10-003 processed_transcript Mus_musculus 0.000008 57
ENSMUST00000121043 Hoxa10-004 protein_coding Mus_musculus 0.000008 57
ENSMUST00000126402 Hoxa10-002 processed_transcript Mus_musculus 0.000008 57
ENSMUST00000125581 Hoxa10-001 protein_coding Mus_musculus 0.000008 57

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