C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lin-7 homolog A (C. elegans)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111052 LIN7A 9606 - 12:80792520-80937925 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261203 LIN7A-002 80797575-80937780 nonsense_mediated_decay
  ENST00000549417 LIN7A-003 80841689-80937704 protein_coding
  ENST00000552093 LIN7A-004 80845564-80889348 protein_coding
  ENST00000552864 LIN7A-001 80792520-80937925 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261203ENST00000552864
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261203 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.983±0.00 N/A 23.967±5.68
ENST00000552864 2.754±0.00 1.135±0.00 1.883±0.00 7.515±0.60 1.571±0.69 0.957±0.37 1.002±0.27 4.019±0.50 2.653±0.79 2.166±0.12 0.302±0.00 1.066±0.34 0.420±0.20 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002BG CIL_0002BG_0002 CGP 12:80716912-80937925
CIL_0002BF CIL_0002BF_0002 CGP 12:80792520-81261205

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005923 IEA tight junction
GO:0006461 TAS protein complex assembly
GO:0006887 IEA exocytosis
GO:0007269 IEA neurotransmitter secretion
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016323 IEA basolateral plasma membrane
GO:0030165 IEA PDZ domain binding
GO:0043005 IEA neuron projection
GO:0045202 IEA synapse
GO:0045211 IEA postsynaptic membrane
GO:0048489 IEA synaptic vesicle transport
GO:0048839 IEA inner ear development
GO:0070062 IDA extracellular vesicular exosome
GO:0097016 IPI L27 domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013414 lin7a lin-7 homolog A (C. elegans) protein_coding Danio_rerio
ENSMUSG00000019906 Lin7a lin-7 homolog A (C. elegans) protein_coding Mus_musculus

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