C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002BG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000007277-ENSDARG00000013414 CGP 7955 4:20676918-20787163
GeneTranscriptPositionBiotype
ENSDARG00000007277 (myf5)
myogenic factor 5 		ENSDART00000112035 (myf5-201) 20676918-20680790 protein_coding
ENSDART00000127664 (myf5-001) 20676918-20680797 protein_coding
ENSDARG00000013414 (lin7a)
lin-7 homolog A (C. elegans) 		ENSDART00000019748 (lin7a-001) 20687452-20787163 protein_coding
CIL_0002BG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000111049-ENSG00000111052 CGP 9606 12:80716912-80937925
GeneTranscriptPositionBiotype
ENSG00000111049 (MYF5)
myogenic factor 5 		ENST00000228644 (MYF5-001) 80716912-80719673 protein_coding
ENSG00000111052 (LIN7A)
lin-7 homolog A (C. elegans) 		ENST00000261203 (LIN7A-002) 80797575-80937780 nonsense_mediated_decay
ENST00000549417 (LIN7A-003) 80841689-80937704 protein_coding
ENST00000552093 (LIN7A-004) 80845564-80889348 protein_coding
ENST00000552864 (LIN7A-001) 80792520-80937925 protein_coding
ENSG00000111058 (ACSS3)
acyl-CoA synthetase short-chain family member 3 		ENST00000261206 (ACSS3-002) 81078057-81255466 protein_coding
ENST00000546664 (ACSS3-006) 81174832-81220031 nonsense_mediated_decay
ENST00000548058 (ACSS3-001) 81077211-81261205 protein_coding
ENST00000548324 (ACSS3-003) 81151651-81255803 retained_intron
ENST00000548387 (ACSS3-004) 81134795-81143502 retained_intron
ENST00000549175 (ACSS3-007) 80937815-81134963 protein_coding
ENST00000551745 (ACSS3-005) 81174558-81199822 retained_intron
ENST00000616449 (ACSS3-008) 80936414-80940246 processed_transcript
ENSG00000257741 (LINC01490)
long intergenic non-protein coding RNA 1490 		ENST00000548705 (LINC01490-002) 80763154-80769891 lincRNA
ENST00000551399 (LINC01490-001) 80763154-80770717 lincRNA
ENSG00000258215 (RP11-299A16.1)
 ENST00000549144 (RP11-299A16.1-001) 80860955-80861508 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002BG_0001ENSDARG00000007277ENSDART00000112035ENSDART00000127664ENSDARG00000013414ENSDART00000019748CIL_0002BG_0002ENSG00000111049ENST00000228644ENSG00000111052ENST00000261203ENST00000549417ENST00000552093ENST00000552864ENSG00000111058ENST00000261206ENST00000546664ENST00000548058ENST00000548324ENST00000548387ENST00000549175ENST00000551745ENST00000616449ENSG00000257741ENST00000548705ENST00000551399ENSG00000258215ENST00000549144
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002BG_0001ENSDARG00000007277ENSDART00000112035ENSDART00000127664ENSDARG00000013414ENSDART00000019748CIL_0002BG_0002ENSG00000111049ENST00000228644ENSG00000111052ENST00000261203ENST00000552864ENSG00000111058ENST00000261206ENST00000548058ENST00000548324ENST00000548387ENSG00000257741ENST00000548705ENST00000551399ENSG00000258215ENST00000549144
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000007277 ENSDART00000112035 N/A N/A N/A 0.047±0.01 N/A N/A 0.295±0.00 0.147±0.00 N/A N/A 0.264±0.00 N/A N/A N/A
ENSDART00000127664 N/A N/A N/A N/A N/A N/A 0.042±0.00 0.097±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000013414 ENSDART00000019748 N/A N/A N/A 18.744±9.28 N/A N/A 1.091±0.43 0.897±0.39 N/A N/A 2.629±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000111049 ENST00000228644 N/A 0.007±0.00 N/A N/A 0.054±0.00 N/A N/A N/A N/A N/A 1.205±0.27 N/A N/A N/A
ENSG00000111052 ENST00000261203 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.983±0.00 N/A 23.967±5.68
ENST00000549417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552864 2.754±0.00 1.135±0.00 1.883±0.00 7.515±0.60 1.571±0.69 0.957±0.37 1.002±0.27 4.019±0.50 2.653±0.79 2.166±0.12 0.302±0.00 1.066±0.34 0.420±0.20 N/A
ENSG00000111058 ENST00000261206 7.441±0.00 N/A 3.995±0.00 N/A 5.705±0.00 1.828±0.93 2.588±1.27 5.437±1.50 6.184±3.76 2.912±0.00 1.310±0.00 2.970±1.31 0.525±0.28 4.577±0.00
ENST00000546664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548058 1.841±0.00 0.668±0.00 0.995±0.00 N/A 1.009±0.00 0.208±0.00 0.900±0.00 1.772±0.01 1.447±0.46 0.914±0.00 0.247±0.00 1.136±0.72 0.250±0.23 1.079±0.00
ENST00000548324 5.147±0.00 1.687±0.00 N/A N/A 2.094±0.00 N/A N/A 4.112±0.00 N/A 2.220±0.00 N/A 2.523±0.30 N/A N/A
ENST00000548387 N/A N/A N/A N/A N/A N/A N/A 14.808±0.00 N/A 9.742±0.00 4.022±0.00 N/A N/A N/A
ENST00000549175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000257741 ENST00000548705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.566±0.09
ENST00000551399 0.017±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.231±0.12
ENSG00000258215 ENST00000549144 N/A N/A N/A N/A 0.186±0.00 N/A 0.168±0.00 0.362±0.00 0.119±0.00 0.536±0.00 N/A 0.099±0.00 0.063±0.00 N/A

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