C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: KRR1, small subunit (SSU) processome component, homolog (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111615 KRR1 9606 - 12:75490861-75511636 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000229214 KRR1-001 75490861-75511621 protein_coding
  ENST00000438169 KRR1-003 75499809-75511597 protein_coding
  ENST00000550023 KRR1-002 75506164-75511613 retained_intron
  ENST00000550898 KRR1-004 75506520-75511636 retained_intron
  ENST00000551070 KRR1-005 75499830-75504282 retained_intron
  ENST00000612627 KRR1-201 75499835-75511608 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000229214ENST00000438169ENST00000612627
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000229214 2.331±0.00 3.328±0.00 N/A 2.039±0.02 2.267±0.00 1.716±0.00 2.206±0.00 1.800±0.42 1.829±1.01 2.688±0.95 1.863±0.79 2.649±0.97 1.985±0.67 1.780±0.87
ENST00000438169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.485±0.00 10.894±0.00 15.886±0.00
ENST00000612627 N/A 7.720±0.00 4.160±0.00 5.621±1.62 5.755±0.00 4.478±1.26 3.578±0.00 5.165±0.00 5.233±1.85 N/A 3.052±0.00 8.411±1.22 7.734±0.00 10.180±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002B7 CIL_0002B7_0002 CGP 12:75480680-75511636

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006364 IEA rRNA processing
GO:0016020 IDA membrane
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding
GO:0045171 IDA intercellular bridge

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011246 krr1 KRR1, small subunit (SSU) processome component, homolog (yeast) protein_coding Danio_rerio
ENSMUSG00000063334 Krr1 KRR1, small subunit (SSU) processome component, homolog (yeast) protein_coding Mus_musculus

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