C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: KRR1, small subunit (SSU) processome component, homolog (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000063334 Krr1 10090 + 10:111972664-111988432 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000075924 Krr1-003 111972775-111986894 retained_intron
  ENSMUST00000162678 Krr1-002 111972757-111976515 retained_intron
  ENSMUST00000163048 Krr1-001 111972664-111988432 protein_coding
  ENSMUST00000174653 Krr1-004 111972793-111984681 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075924ENSMUST00000162678ENSMUST00000163048ENSMUST00000174653
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075924 1.707±0.91 0.676±0.28 4.387±1.55 2.816±2.01 1.167±0.00 1.622±0.00 1.358±0.08 1.525±0.14 2.044±2.16 2.379±0.00 3.448±1.03 2.701±3.01 7.061±2.75 1.757±0.98
ENSMUST00000162678 1.025±0.00 1.049±0.37 N/A N/A N/A N/A 1.052±0.00 N/A N/A N/A N/A 2.650±1.34 N/A N/A
ENSMUST00000163048 0.939±0.48 0.588±0.18 2.275±0.06 1.053±0.11 1.855±0.35 1.450±0.52 0.525±0.05 0.983±0.35 1.241±0.38 1.804±0.60 0.965±0.10 0.940±0.56 1.540±0.17 0.577±0.12
ENSMUST00000174653 1.533±0.02 N/A N/A 8.555±0.00 N/A N/A 2.575±0.64 3.892±0.56 2.742±1.83 N/A 3.586±0.32 4.540±5.25 10.523±5.05 4.342±2.48

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006364 IEA rRNA processing
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding
GO:0045171 IEA intercellular bridge

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011246 krr1 KRR1, small subunit (SSU) processome component, homolog (yeast) protein_coding Danio_rerio
ENSG00000111615 KRR1 KRR1, small subunit (SSU) processome component, homolog (yeast) protein_coding Homo_sapiens

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