C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: KRR1, small subunit (SSU) processome component, homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000229214 KRR1-001 ENSG00000111615 9606 - 12:75490861-75511621 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000229214
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000229214 2.331±0.00 3.328±0.00 2.039±0.02 2.267±0.00 1.716±0.00 2.206±0.00 1.800±0.42 1.829±1.01 2.688±0.95 1.863±0.79 2.649±0.97 1.985±0.67 1.780±0.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002B7 CIL_0002B7_0002 CGP 12:75480680-75511636

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006364 IEA rRNA processing
GO:0016020 IDA membrane
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding
GO:0045171 IDA intercellular bridge

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163048 Krr1-001 protein_coding Mus_musculus 0 1223
ENSMUST00000075924 Krr1-003 retained_intron Mus_musculus 0 717
ENSMUST00000174653 Krr1-004 protein_coding Mus_musculus 0 667
ENSMUST00000162678 Krr1-002 retained_intron Mus_musculus 0 217
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00000002 68

Loading