C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111701 APOBEC1 9606 - 12:7649400-7665903 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000229304 APOBEC1-001 7649400-7665893 protein_coding
  ENST00000467171 APOBEC1-002 7649400-7665903 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLiverOvaryTestisENST00000229304ENST00000467171
Transcript ID Breast Liver Ovary Testis
ENST00000229304 N/A 0.005±0.00 0.741±0.06 0.058±0.02
ENST00000467171 1.807±0.00 0.038±0.00 0.576±0.00 0.081±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001I CIL_00001I_0001 CGP 12:7649400-7695776

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 TAS RNA binding
GO:0003824 IEA catalytic activity
GO:0004126 TAS cytidine deaminase activity
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006396 TAS RNA processing
GO:0006397 IEA mRNA processing
GO:0006629 TAS lipid metabolic process
GO:0006970 IEA response to osmotic stress
GO:0008270 IEA zinc ion binding
GO:0009972 TAS cytidine deamination
GO:0010043 IEA response to zinc ion
GO:0010332 IEA response to gamma radiation
GO:0010467 TAS gene expression
GO:0016554 TAS cytidine to uridine editing
GO:0016556 TAS mRNA modification
GO:0016814 IEA hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
GO:0017091 IEA AU-rich element binding
GO:0032869 IEA cellular response to insulin stimulus
GO:0042127 IEA regulation of cell proliferation
GO:0042157 IEA lipoprotein metabolic process
GO:0042158 IEA lipoprotein biosynthetic process
GO:0042493 IEA response to drug
GO:0042953 IEA lipoprotein transport
GO:0045471 IEA response to ethanol
GO:0048255 IEA mRNA stabilization
GO:0051592 IEA response to calcium ion
GO:0051607 IEA defense response to virus
GO:0080111 ISS DNA demethylation
GO:0090310 ISS negative regulation of methylation-dependent chromatin silencing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000040613 Apobec1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 protein_coding Mus_musculus

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