C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040613 Apobec1 10090 - 6:122577792-122602444 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000112585 Apobec1-002 122577801-122602371 protein_coding
  ENSMUST00000112586 Apobec1-001 122577792-122602444 protein_coding
  ENSMUST00000112587 Apobec1-201 122577799-122600127 protein_coding
  ENSMUST00000143356 Apobec1-004 122588053-122602364 processed_transcript
  ENSMUST00000147760 Apobec1-003 122587322-122602370 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112585ENSMUST00000112586ENSMUST00000112587ENSMUST00000143356
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112585 5.348±1.11 1.871±0.84 4.069±0.04 0.301±0.05 4.700±0.66 7.816±0.98 1.075±0.57 1.440±0.45 2.088±1.09 2.645±0.51 0.719±0.24 5.671±2.82 0.448±0.27 0.179±0.05
ENSMUST00000112586 3.236±0.40 1.510±0.76 N/A 0.125±0.00 4.042±1.38 1.712±0.24 0.762±0.00 0.678±0.31 1.173±0.66 1.413±0.22 N/A 3.746±1.61 0.128±0.07 0.166±0.06
ENSMUST00000112587 N/A N/A N/A N/A 4.872±0.00 2.714±1.46 0.424±0.00 N/A N/A N/A 0.129±0.00 3.663±0.00 0.883±0.00 0.029±0.00
ENSMUST00000143356 12.211±1.48 5.934±2.22 N/A N/A 15.251±1.64 N/A 2.552±0.80 3.466±0.65 4.644±1.62 4.821±0.58 0.721±0.06 13.943±3.60 0.492±0.25 0.482±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HL CIL_0008HL_0002 VISTA 6:122092605-122696323
CIL_00001I CIL_00001I_0002 CGP 6:122577792-122610087

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 ISS cytoplasm
GO:0006397 IEA mRNA processing
GO:0006970 IEA response to osmotic stress
GO:0008270 IEA zinc ion binding
GO:0010043 IEA response to zinc ion
GO:0010332 IMP response to gamma radiation
GO:0016554 IMP cytidine to uridine editing
GO:0016556 IMP mRNA modification
GO:0016814 IEA hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
GO:0017091 IDA AU-rich element binding
GO:0032869 IEA cellular response to insulin stimulus
GO:0042127 IGI regulation of cell proliferation
GO:0042157 IMP lipoprotein metabolic process
GO:0042158 IGI lipoprotein biosynthetic process
GO:0042493 IEA response to drug
GO:0042953 IGI lipoprotein transport
GO:0045471 IEA response to ethanol
GO:0048255 IDA mRNA stabilization
GO:0051592 IEA response to calcium ion
GO:0051607 IEA defense response to virus
GO:0080111 IDA DNA demethylation
GO:0090310 IMP negative regulation of methylation-dependent chromatin silencing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000111701 APOBEC1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 protein_coding Homo_sapiens

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