C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: radial spoke head 4 homolog A (Chlamydomonas)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111834 RSPH4A 9606 + 6:116616479-116632985 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000229554 RSPH4A-002 116616487-116632978 protein_coding
  ENST00000368580 RSPH4A-001 116616624-116632441 protein_coding
  ENST00000368581 RSPH4A-201 116616479-116632985 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000229554ENST00000368580ENST00000368581
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000229554 0.155±0.00 0.278±0.15 0.198±0.00 0.091±0.00 N/A 0.271±0.00 N/A 1.866±0.57 N/A 4.272±0.00 N/A 1.355±0.23
ENST00000368580 N/A N/A 0.070±0.00 N/A N/A N/A N/A 2.507±0.00 0.206±0.00 0.112±0.00 N/A 0.624±0.00
ENST00000368581 N/A 0.097±0.04 N/A 0.058±0.00 0.027±0.02 0.042±0.00 0.074±0.06 N/A 0.083±0.00 0.360±0.00 0.021±0.01 1.455±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005H0 CIL_0005H0_0001 CGP 6:116616479-116668794

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001534 ISS radial spoke
GO:0003341 IMP cilium movement
GO:0003674 ND molecular_function
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005856 IEA cytoskeleton
GO:0005930 IC axoneme
GO:0031514 IC motile cilium
GO:0035082 IMP axoneme assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000067606 rsph4a radial spoke head 4 homolog A (Chlamydomonas) protein_coding Danio_rerio
ENSMUSG00000039552 Rsph4a radial spoke head 4 homolog A (Chlamydomonas) protein_coding Mus_musculus

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