C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cyclin C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000112237 CCNC 9606 - 6:99542380-99568973 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000326298 CCNC-010 99542387-99568631 nonsense_mediated_decay
  ENST00000369217 CCNC-004 99550994-99568623 protein_coding
  ENST00000369220 CCNC-011 99542387-99568628 protein_coding
  ENST00000482541 CCNC-005 99557240-99568628 protein_coding
  ENST00000484049 CCNC-006 99543780-99568652 nonsense_mediated_decay
  ENST00000486428 CCNC-002 99543464-99561658 protein_coding
  ENST00000518714 CCNC-003 99543780-99568662 protein_coding
  ENST00000519617 CCNC-018 99545205-99549647 retained_intron
  ENST00000520371 CCNC-007 99542502-99568713 protein_coding
  ENST00000520429 CCNC-001 99542380-99568973 protein_coding
  ENST00000521017 CCNC-016 99550571-99568628 processed_transcript
  ENST00000523310 CCNC-015 99558414-99561872 retained_intron
  ENST00000523541 CCNC-014 99562020-99568689 retained_intron
  ENST00000523639 CCNC-017 99550856-99568767 retained_intron
  ENST00000523799 CCNC-013 99543448-99568825 protein_coding
  ENST00000523961 CCNC-009 99543289-99568646 nonsense_mediated_decay
  ENST00000523985 CCNC-008 99543475-99568660 protein_coding
  ENST00000524049 CCNC-012 99545168-99568227 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000326298ENST00000369220ENST00000482541ENST00000486428ENST00000518714ENST00000520371ENST00000520429ENST00000523541ENST00000523799ENST00000523985
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000326298 N/A N/A 1.053±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000369220 N/A 2.292±0.00 3.954±0.00 1.960±0.38 N/A 3.611±0.35 2.585±0.00 3.344±0.00 N/A 3.203±0.33 5.415±3.20 N/A
ENST00000482541 N/A N/A 1.755±0.00 N/A N/A N/A N/A 1.742±0.00 N/A N/A N/A N/A
ENST00000486428 N/A 4.193±0.00 4.076±0.00 6.563±0.00 2.265±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000518714 3.039±0.00 N/A N/A N/A 2.032±0.00 5.793±0.00 N/A 2.073±0.00 N/A N/A N/A 3.335±0.75
ENST00000520371 1.451±0.00 N/A N/A N/A N/A N/A N/A N/A 0.919±0.00 3.035±0.00 N/A 3.131±0.00
ENST00000520429 N/A N/A N/A N/A 0.913±0.00 N/A N/A N/A N/A 1.609±0.00 N/A N/A
ENST00000523541 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.919±0.00 N/A N/A
ENST00000523799 N/A 3.014±0.00 N/A N/A N/A N/A N/A N/A N/A 5.474±0.00 N/A N/A
ENST00000523985 N/A N/A N/A N/A N/A 5.002±0.00 N/A N/A N/A 8.934±0.00 12.377±0.00 6.346±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000079 IEA regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0006351 TAS transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0007219 TAS Notch signaling pathway
GO:0010467 TAS gene expression
GO:0016591 IEA DNA-directed RNA polymerase II, holoenzyme
GO:0016592 IEA mediator complex
GO:0019901 IEA protein kinase binding
GO:0045944 TAS positive regulation of transcription from RNA polymerase II promoter
GO:0051726 IEA regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009607 ccnc cyclin C protein_coding Danio_rerio
ENSMUSG00000028252 Ccnc cyclin C protein_coding Mus_musculus

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