C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin beta 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000113205 PCDHB3 9606 + 5:141100473-141152636 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000231130 PCDHB3-001 141100473-141103827 protein_coding
  ENST00000543635 PCDHB3-201 141100650-141152636 protein_coding
  ENST00000624513 PCDHB3-002 141102687-141102983 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyMuscleOvaryTestisENST00000231130
Transcript ID Breast Colon Kidney Muscle Ovary Testis
ENST00000231130 1.687±0.00 1.942±0.00 0.087±0.00 0.264±0.00 0.703±0.00 6.935±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_0004 CGP 5:141094578-141152636
CIL_00062S CIL_00062S_0005 CGP 5:141100473-141152636

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005887 TAS integral component of plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 TAS synaptic transmission
GO:0007399 TAS nervous system development
GO:0007416 TAS synapse assembly
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010684 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000071889 pcdh2g8 protocadherin 2 gamma 8 protein_coding Danio_rerio
ENSDARG00000071891 pcdh2g6 protocadherin 2 gamma 6 protein_coding Danio_rerio
ENSDARG00000071892 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074738 pcdh2g9 protocadherin 2 gamma 9 protein_coding Danio_rerio
ENSDARG00000077343 CT573264.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077867 CT573264.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000079937 pcdh2g5 protocadherin 2 gamma 5 protein_coding Danio_rerio
ENSMUSG00000045498 Pcdhb3 protocadherin beta 3 protein_coding Mus_musculus

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