Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info
Description:	protocadherin beta 3
Gene Accession	Gene Name	Tax ID	Strand	Position	Gene Biotype
ENSMUSG00000045498	Pcdhb3	10090	+	18:37300799-37304585	protein_coding
	Transcript Accession		Transcript Name	Position	Transcript Biotype
	ENSMUST00000051754		Pcdhb3-201	37300799-37304585	protein_coding

Expression Patterns

Transcript ID	Adipose	Adrenal	Bladder	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENSMUST00000051754	0.949±0.69	0.270±0.08	0.336±0.02	1.149±0.28	0.502±0.19	0.242±0.03	0.146±0.05	0.128±0.02	0.023±0.01	1.282±0.08	0.020±0.01	1.764±1.08	0.024±0.01	0.377±0.35

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_00062S	CIL_00062S_000X	CGP	18:37294840-37304585
CIL_00062S	CIL_00062S_000L	CGP	18:37300799-37311173

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0005509	IEA	calcium ion binding
GO:0005886	IEA	plasma membrane
GO:0007156	IEA	homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021	IEA	integral component of membrane

Homologs
ENSEMBL Accession	Gene Name	Description	Biotype	Species
ENSDARG00000010684	CU915772.1	Uncharacterized protein	protein_coding	Danio_rerio
ENSDARG00000071889	pcdh2g8	protocadherin 2 gamma 8	protein_coding	Danio_rerio
ENSDARG00000071891	pcdh2g6	protocadherin 2 gamma 6	protein_coding	Danio_rerio
ENSDARG00000071892	CU915772.1	Uncharacterized protein	protein_coding	Danio_rerio
ENSDARG00000074738	pcdh2g9	protocadherin 2 gamma 9	protein_coding	Danio_rerio
ENSDARG00000077343	CT573264.2	Uncharacterized protein	protein_coding	Danio_rerio
ENSDARG00000077867	CT573264.3	Uncharacterized protein	protein_coding	Danio_rerio
ENSDARG00000079937	pcdh2g5	protocadherin 2 gamma 5	protein_coding	Danio_rerio
ENSG00000113205	PCDHB3	protocadherin beta 3	protein_coding	Homo_sapiens

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