C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000231130 PCDHB3-001 ENSG00000113205 9606 + 5:141100473-141103827 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyMuscleOvaryTestisENST00000231130
Transcript ID Breast Colon Kidney Muscle Ovary Testis
ENST00000231130 1.687±0.00 1.942±0.00 0.087±0.00 0.264±0.00 0.703±0.00 6.935±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_0004 CGP 5:141094578-141152636
CIL_00062S CIL_00062S_0005 CGP 5:141100473-141152636

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005887 TAS integral component of plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 TAS synaptic transmission
GO:0007399 TAS nervous system development
GO:0007416 TAS synapse assembly
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051754 Pcdhb3-201 protein_coding Mus_musculus 0 1842
ENSMUST00000056915 Pcdhb13-201 protein_coding Mus_musculus 0 1037
ENSMUST00000053856 Pcdhb17-201 protein_coding Mus_musculus 0 946
ENSMUST00000056522 Pcdhb2-201 protein_coding Mus_musculus 0 924
ENSMUST00000053073 Pcdhb11-201 protein_coding Mus_musculus 0 913
ENSMUST00000051163 Pcdhb8-201 protein_coding Mus_musculus 0 896
ENSMUST00000050034 Pcdhb15-201 protein_coding Mus_musculus 0 819

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