C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000113719 ERGIC1 9606 + 5:172834275-172952685 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000326654 ERGIC1-001 172905240-172918335 protein_coding
  ENST00000393784 ERGIC1-002 172834275-172952685 protein_coding
  ENST00000518247 ERGIC1-007 172905217-172924080 protein_coding
  ENST00000519567 ERGIC1-008 172906060-172926563 protein_coding
  ENST00000519796 ERGIC1-012 172909667-172932478 nonsense_mediated_decay
  ENST00000519860 ERGIC1-006 172834319-172898585 processed_transcript
  ENST00000520326 ERGIC1-009 172834335-172915691 protein_coding
  ENST00000520399 ERGIC1-005 172931093-172938007 retained_intron
  ENST00000520642 ERGIC1-010 172834385-172924061 nonsense_mediated_decay
  ENST00000521392 ERGIC1-011 172922145-172932511 processed_transcript
  ENST00000523215 ERGIC1-003 172933662-172952680 retained_intron
  ENST00000523291 ERGIC1-013 172834411-172920571 protein_coding
  ENST00000523366 ERGIC1-014 172924103-172927099 processed_transcript
  ENST00000523650 ERGIC1-015 172920364-172932536 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000326654ENST00000393784ENST00000520399
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000326654 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.588±0.00 N/A N/A N/A N/A
ENST00000393784 45.210±0.00 45.967±0.00 2.869±0.00 13.231±3.18 31.263±17.74 34.369±16.73 19.373±14.07 42.927±15.93 76.167±59.04 34.121±21.52 31.007±24.22 39.699±19.89 49.515±12.22 28.067±11.88
ENST00000520399 N/A N/A 0.755±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KN CIL_0008KN_0001 VISTA 5:172471670-173074006
CIL_0000OT CIL_0000OT_0002 CGP 5:172768090-172952685

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005793 IDA endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IEA Golgi apparatus
GO:0006888 IDA ER to Golgi vesicle-mediated transport
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005273 ergic1 endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 protein_coding Danio_rerio
ENSMUSG00000001576 Ergic1 endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 protein_coding Mus_musculus

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