C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001576 Ergic1 10090 + 17:26561489-26656931 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001619 Ergic1-004 26561545-26655174 processed_transcript
  ENSMUST00000163213 Ergic1-006 26621449-26655174 processed_transcript
  ENSMUST00000165021 Ergic1-003 26561518-26569063 processed_transcript
  ENSMUST00000165802 Ergic1-002 26624183-26643882 retained_intron
  ENSMUST00000167070 Ergic1-007 26638747-26655352 protein_coding
  ENSMUST00000167662 Ergic1-001 26561489-26656931 protein_coding
  ENSMUST00000170640 Ergic1-005 26614397-26634439 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001619ENSMUST00000167662
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001619 N/A 26.003±0.00 N/A N/A 38.718±13.77 N/A 6.463±0.00 N/A 13.002±1.81 N/A N/A 31.996±16.05 7.474±1.37 15.583±10.59
ENSMUST00000167662 108.238±5.98 87.336±7.60 40.874±14.23 28.566±16.50 73.174±12.62 90.457±10.43 22.204±3.42 51.688±8.28 35.163±13.92 49.715±4.79 12.500±0.88 84.313±33.43 13.666±10.40 11.975±6.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KN CIL_0008KN_0002 VISTA 17:26208852-26810691
CIL_000915 CIL_000915_0002 VISTA 17:26527896-27128643

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005793 IEA endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IEA Golgi apparatus
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005273 ergic1 endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 protein_coding Danio_rerio
ENSG00000113719 ERGIC1 endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 protein_coding Homo_sapiens

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