C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393784 ERGIC1-002 ENSG00000113719 9606 + 5:172834275-172952685 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000393784
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000393784 45.210±0.00 45.967±0.00 2.869±0.00 13.231±3.18 31.263±17.74 34.369±16.73 19.373±14.07 42.927±15.93 76.167±59.04 34.121±21.52 31.007±24.22 39.699±19.89 49.515±12.22 28.067±11.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KN CIL_0008KN_0001 VISTA 5:172471670-173074006
CIL_0000OT CIL_0000OT_0002 CGP 5:172768090-172952685

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005793 IDA endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IEA Golgi apparatus
GO:0006888 IDA ER to Golgi vesicle-mediated transport
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167662 Ergic1-001 protein_coding Mus_musculus 0 1369
ENSMUST00000001619 Ergic1-004 processed_transcript Mus_musculus 0 1142
ENSMUST00000163213 Ergic1-006 processed_transcript Mus_musculus 0 959
ENSMUST00000165802 Ergic1-002 retained_intron Mus_musculus 0 830
ENSDART00000020740 ergic1-201 protein_coding Danio_rerio 0 568
ENSDART00000123001 ergic1-001 protein_coding Danio_rerio 0 568
ENSMUST00000165021 Ergic1-003 processed_transcript Mus_musculus 3.00018e-42 178

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