C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: selenoprotein K
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000113811 SELK 9606 - 3:53884410-53891988 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000485414 SELK-002 53888395-53891885 processed_transcript
  ENST00000487571 SELK-003 53887996-53891855 retained_intron
  ENST00000488746 SELK-004 53885301-53891865 nonsense_mediated_decay
  ENST00000495461 SELK-001 53884410-53891988 protein_coding
  ENST00000541726 SELK-201 53885200-53891962 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000488746ENST00000495461ENST00000541726
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000488746 15.521±0.00 10.625±0.00 N/A 11.229±0.00 17.167±0.00 30.850±0.00 19.993±0.00 21.434±0.00 17.733±0.00 42.360±0.00 18.206±0.00 15.689±5.03 9.112±0.77 14.621±9.23
ENST00000495461 3.232±0.00 4.162±0.00 0.380±0.00 4.582±3.03 2.131±1.08 1.608±1.12 3.018±2.13 6.148±0.00 2.702±0.70 3.374±2.52 1.669±0.82 3.400±1.81 4.161±0.61 3.522±0.00
ENST00000541726 14.971±0.00 22.858±0.00 3.461±0.00 23.068±9.25 13.327±4.39 21.875±15.57 17.355±9.73 22.895±17.14 6.739±2.43 19.494±16.84 12.257±0.23 19.907±17.34 17.247±4.31 36.428±13.37

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005789 IEA endoplasmic reticulum membrane
GO:0006816 IEA calcium ion transport
GO:0010742 IEA macrophage derived foam cell differentiation
GO:0018345 IEA protein palmitoylation
GO:0030335 IEA positive regulation of cell migration
GO:0042102 IEA positive regulation of T cell proliferation
GO:0045728 IEA respiratory burst after phagocytosis
GO:0051223 IEA regulation of protein transport
GO:2000406 IEA positive regulation of T cell migration

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045202 selk selenoprotein K protein_coding Danio_rerio
ENSMUSG00000042682 Selk selenoprotein K protein_coding Mus_musculus

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