C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: claudin 16
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000113946 CLDN16 9606 + 3:190322541-190412143 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264734 CLDN16-001 190387872-190412143 protein_coding
  ENST00000456423 CLDN16-002 190388120-190410008 protein_coding
  ENST00000468220 CLDN16-003 190322541-190404930 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000264734ENST00000456423ENST00000468220
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000264734 0.019±0.00 0.058±0.00 6.058±0.00 0.039±0.02 0.003±0.00 0.021±0.01 7.682±0.00 0.072±0.00 0.105±0.00 0.147±0.09 0.024±0.01 N/A
ENST00000456423 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.124±0.00
ENST00000468220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.240±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DN CIL_0000DN_0001 CGP 3:190305701-190412143
CIL_0000DO CIL_0000DO_0001 CGP 3:190322541-190449876

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0005923 ISS tight junction
GO:0006875 TAS cellular metal ion homeostasis
GO:0007588 TAS excretion
GO:0015095 TAS magnesium ion transmembrane transporter activity
GO:0015693 TAS magnesium ion transport
GO:0016021 IEA integral component of membrane
GO:0016338 ISS calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules
GO:0042802 ISS identical protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000038148 Cldn16 claudin 16 protein_coding Mus_musculus

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