C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: claudin 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000264734 CLDN16-001 ENSG00000113946 9606 + 3:190387872-190412143 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLungMuscleOvaryPlacentaENST00000264734
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Lung Muscle Ovary Placenta
ENST00000264734 0.019±0.00 0.058±0.00 6.058±0.00 0.039±0.02 0.003±0.00 0.021±0.01 7.682±0.00 0.072±0.00 0.105±0.00 0.147±0.09 0.024±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DN CIL_0000DN_0001 CGP 3:190305701-190412143
CIL_0000DO CIL_0000DO_0001 CGP 3:190322541-190449876

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0005923 ISS tight junction
GO:0006875 TAS cellular metal ion homeostasis
GO:0007588 TAS excretion
GO:0015095 TAS magnesium ion transmembrane transporter activity
GO:0015693 TAS magnesium ion transport
GO:0016021 IEA integral component of membrane
GO:0016338 ISS calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules
GO:0042802 ISS identical protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161053 Cldn16-001 protein_coding Mus_musculus 0 774
ENSMUST00000115302 Cldn16-002 protein_coding Mus_musculus 0 769

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