C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chondroitin sulfate proteoglycan 5 (neuroglycan C)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000114646 CSPG5 9606 - 3:47562239-47580792 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264723 CSPG5-002 47562239-47580792 protein_coding
  ENST00000383738 CSPG5-001 47562239-47580792 protein_coding
  ENST00000456150 CSPG5-003 47562239-47578133 protein_coding
  ENST00000465441 CSPG5-004 47577687-47580240 processed_transcript
  ENST00000610462 CSPG5-201 47562247-47578869 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000383738ENST00000456150ENST00000610462
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000383738 N/A 0.010±0.00 N/A 1.755±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456150 0.144±0.00 N/A N/A 18.977±12.13 0.251±0.00 N/A 0.007±0.00 N/A N/A 0.894±0.00 N/A 0.061±0.05 1.286±0.34 2.136±0.18
ENST00000610462 0.039±0.00 N/A 0.106±0.00 1.302±0.00 0.046±0.00 0.174±0.00 0.034±0.03 0.033±0.00 0.019±0.01 N/A 0.399±0.00 0.155±0.06 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000350 CIL_000350_0003 CGP 3:47562239-47782106

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005796 TAS Golgi lumen
GO:0005887 TAS integral component of plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0007399 TAS nervous system development
GO:0008083 TAS growth factor activity
GO:0016020 TAS membrane
GO:0016021 TAS integral component of membrane
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0030206 TAS chondroitin sulfate biosynthetic process
GO:0030207 TAS chondroitin sulfate catabolic process
GO:0030208 TAS dermatan sulfate biosynthetic process
GO:0030660 IDA Golgi-associated vesicle membrane
GO:0031103 IEA axon regeneration
GO:0040008 IEA regulation of growth
GO:0043202 TAS lysosomal lumen
GO:0044281 TAS small molecule metabolic process
GO:0046907 TAS intracellular transport
GO:0050804 IEA regulation of synaptic transmission

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069981 cspg5a chondroitin sulfate proteoglycan 5a protein_coding Danio_rerio
ENSDARG00000070863 cspg5b chondroitin sulfate proteoglycan 5b protein_coding Danio_rerio
ENSMUSG00000032482 Cspg5 chondroitin sulfate proteoglycan 5 protein_coding Mus_musculus

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