C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chondroitin sulfate proteoglycan 5 (neuroglycan C)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000456150 CSPG5-003 ENSG00000114646 9606 - 3:47562239-47578133 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartLungOvaryPlacentaTestisENST00000456150
Transcript ID Adipose Brain Breast Heart Lung Ovary Placenta Testis
ENST00000456150 0.144±0.00 18.977±12.13 0.251±0.00 0.007±0.00 0.894±0.00 0.061±0.05 1.286±0.34 2.136±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000350 CIL_000350_0003 CGP 3:47562239-47782106

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005796 TAS Golgi lumen
GO:0005887 TAS integral component of plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0007399 TAS nervous system development
GO:0008083 TAS growth factor activity
GO:0016020 TAS membrane
GO:0016021 TAS integral component of membrane
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0030206 TAS chondroitin sulfate biosynthetic process
GO:0030207 TAS chondroitin sulfate catabolic process
GO:0030208 TAS dermatan sulfate biosynthetic process
GO:0030660 IDA Golgi-associated vesicle membrane
GO:0040008 IEA regulation of growth
GO:0043202 TAS lysosomal lumen
GO:0044281 TAS small molecule metabolic process
GO:0046907 TAS intracellular transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035058 Cspg5-201 protein_coding Mus_musculus 0 1288

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