C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000350_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000069981-ENSDARG00000017397 CGP 7955 16:45093086-45232422
GeneTranscriptPositionBiotype
ENSDARG00000017397 (smarcc1a)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1a 		ENSDART00000109259 (smarcc1a-001) 45194689-45232422 protein_coding
ENSDARG00000069981 (cspg5a)
chondroitin sulfate proteoglycan 5a 		ENSDART00000102305 (cspg5a-201) 45093381-45145419 protein_coding
ENSDART00000148475 (cspg5a-001) 45093356-45161600 protein_coding
ENSDART00000148635 (cspg5a-002) 45093086-45145339 processed_transcript

Danio rerio Ensembl (Zv9)

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CIL_000350_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000070863-ENSDARG00000036251 CGP 7955 19:18859894-18960930
GeneTranscriptPositionBiotype
ENSDARG00000036251 (smarcc1b)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b 		ENSDART00000085619 (smarcc1b-201) 18924323-18960911 protein_coding
ENSDART00000104385 (smarcc1b-001) 18923989-18960930 protein_coding
ENSDARG00000070863 (cspg5b)
chondroitin sulfate proteoglycan 5b 		ENSDART00000108819 (cspg5b-003) 18859894-18921149 protein_coding
ENSDART00000137518 (cspg5b-002) 18868975-18921099 nonsense_mediated_decay
ENSDART00000140611 (cspg5b-001) 18869615-18921097 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_000350_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000114646-ENSG00000173473 CGP 9606 3:47562239-47782106
GeneTranscriptPositionBiotype
ENSG00000173473 (SMARCC1)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 		ENST00000254480 (SMARCC1-001) 47585272-47781917 protein_coding
ENST00000425518 (SMARCC1-002) 47587590-47782106 processed_transcript
ENST00000454240 (SMARCC1-004) 47729037-47781881 nonsense_mediated_decay
ENST00000462198 (SMARCC1-006) 47678196-47701654 processed_transcript
ENST00000483847 (SMARCC1-008) 47670350-47678365 retained_intron
ENST00000485737 (SMARCC1-007) 47680223-47701402 retained_intron
ENST00000485833 (SMARCC1-005) 47729025-47746405 processed_transcript
ENST00000492896 (SMARCC1-009) 47590806-47610798 processed_transcript
ENSG00000214773 (RP11-717D12.1)
 ENST00000398957 (RP11-717D12.1-001) 47601715-47604677 sense_intronic
ENSG00000235695 (RP11-395P16.1)
 ENST00000427885 (RP11-395P16.1-001) 47663626-47663934 processed_pseudogene
ENSG00000266457 (AC026318.1)
 ENST00000577585 (AC026318.1-201) 47769111-47769211 miRNA

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000350_0001ENSDARG00000017397ENSDART00000109259ENSDARG00000069981ENSDART00000102305ENSDART00000148475ENSDART00000148635CIL_000350_0002ENSDARG00000036251ENSDART00000085619ENSDART00000104385ENSDARG00000070863ENSDART00000108819ENSDART00000137518ENSDART00000140611CIL_000350_0003ENSG00000173473ENST00000254480ENST00000425518ENST00000454240ENST00000462198ENST00000483847ENST00000485737ENST00000485833ENST00000492896ENSG00000214773ENST00000398957ENSG00000235695ENST00000427885ENSG00000266457ENST00000577585
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000350_0001ENSDARG00000017397ENSDART00000109259ENSDARG00000069981ENSDART00000102305ENSDART00000148475ENSDART00000148635CIL_000350_0002ENSDARG00000036251ENSDART00000085619ENSDART00000104385ENSDARG00000070863ENSDART00000108819ENSDART00000137518ENSDART00000140611CIL_000350_0003ENSG00000173473ENST00000254480ENST00000425518ENSG00000214773ENST00000398957ENSG00000235695ENST00000427885ENSG00000266457ENST00000577585
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000017397 ENSDART00000109259 N/A N/A N/A 5.863±5.89 N/A N/A 5.763±5.58 4.843±5.93 2.215±0.00 N/A 4.200±0.00 N/A N/A N/A
ENSDARG00000069981 ENSDART00000102305 N/A N/A N/A N/A N/A N/A 0.208±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000148475 N/A N/A N/A 13.546±0.00 N/A N/A 0.070±0.02 0.206±0.00 0.062±0.00 N/A 1.255±0.00 N/A N/A N/A
ENSDART00000148635 N/A N/A N/A 19.361±14.16 N/A N/A 0.217±0.17 1.388±0.28 0.053±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000036251 ENSDART00000085619 N/A N/A N/A N/A N/A N/A N/A 0.336±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000104385 N/A N/A N/A 2.784±2.48 N/A N/A 2.361±0.82 3.103±2.21 0.245±0.00 N/A 0.935±0.00 N/A N/A N/A
ENSDARG00000070863 ENSDART00000108819 N/A N/A N/A 9.027±1.38 N/A N/A 0.022±0.00 0.072±0.00 0.037±0.00 N/A 0.460±0.00 N/A N/A N/A
ENSDART00000137518 N/A N/A N/A 36.728±10.42 N/A N/A N/A 0.489±0.32 N/A N/A N/A N/A N/A N/A
ENSDART00000140611 N/A N/A N/A N/A N/A N/A 0.058±0.00 N/A N/A N/A 0.508±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000173473 ENST00000254480 N/A 1.429±0.00 1.816±0.00 1.864±0.00 5.930±0.00 2.779±0.00 0.557±0.00 0.944±0.14 1.579±0.41 1.383±0.00 2.007±0.00 1.869±0.99 1.255±0.00 4.993±2.91
ENST00000425518 N/A N/A 2.728±0.00 1.845±0.43 2.858±0.00 N/A N/A N/A 3.826±0.00 2.912±0.00 1.046±0.00 17.267±0.00 20.481±0.00 16.648±0.00
ENST00000454240 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485737 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000214773 ENST00000398957 0.066±0.00 0.208±0.00 N/A 0.042±0.00 0.105±0.03 N/A 0.118±0.04 N/A N/A 0.097±0.05 0.007±0.00 0.178±0.11 0.044±0.01 0.073±0.04
ENSG00000235695 ENST00000427885 N/A N/A N/A N/A N/A N/A 0.078±0.00 0.087±0.00 0.221±0.00 N/A 0.940±0.00 0.216±0.00 N/A N/A
ENSG00000266457 ENST00000577585 2.164±0.00 N/A N/A N/A N/A 0.969±0.00 N/A 2.167±0.00 N/A 0.365±0.00 N/A 22.690±0.00 N/A 0.304±0.00

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