C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 30 (zinc transporter), member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115194 SLC30A3 9606 - 2:27253684-27275817 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000233535 SLC30A3-001 27254572-27263259 protein_coding
  ENST00000424577 SLC30A3-004 27257906-27275341 protein_coding
  ENST00000426569 SLC30A3-006 27258040-27275345 protein_coding
  ENST00000426924 SLC30A3-007 27257202-27275817 protein_coding
  ENST00000432351 SLC30A3-005 27256804-27264136 protein_coding
  ENST00000445870 SLC30A3-002 27255386-27262871 protein_coding
  ENST00000450118 SLC30A3-003 27258004-27262160 protein_coding
  ENST00000482990 SLC30A3-010 27253847-27257820 retained_intron
  ENST00000486309 SLC30A3-008 27257997-27259044 retained_intron
  ENST00000497341 SLC30A3-009 27253684-27258583 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartOvaryPlacentaTestisENST00000233535ENST00000424577ENST00000432351ENST00000482990ENST00000497341
Transcript ID Adipose Adrenal Brain Colon Heart Ovary Placenta Testis
ENST00000233535 N/A 0.636±0.00 7.154±0.00 N/A 1.011±0.89 0.085±0.00 0.036±0.00 26.270±0.00
ENST00000424577 N/A N/A N/A N/A 0.295±0.00 N/A N/A N/A
ENST00000432351 0.095±0.00 N/A 2.699±0.00 N/A N/A N/A N/A N/A
ENST00000482990 N/A N/A N/A N/A N/A 0.033±0.02 N/A N/A
ENST00000497341 N/A N/A 1.011±0.00 0.028±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EG CIL_0000EG_0001 CGP 2:27217390-27275817
CIL_0000EF CIL_0000EF_0001 CGP 2:27253684-27281499

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0005768 TAS endosome
GO:0005770 IDA late endosome
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS transport
GO:0006812 IEA cation transport
GO:0008021 TAS synaptic vesicle
GO:0008324 IEA cation transmembrane transporter activity
GO:0015633 TAS zinc transporting ATPase activity
GO:0016020 TAS membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0030672 IEA synaptic vesicle membrane
GO:0043005 ISS neuron projection
GO:0051050 IEA positive regulation of transport
GO:0055085 TAS:IEA transmembrane transport
GO:0061088 IDA regulation of sequestering of zinc ion
GO:0071577 TAS zinc ion transmembrane transport
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021305 slc30a2 solute carrier family 30 (zinc transporter), member 2 protein_coding Danio_rerio
ENSMUSG00000029151 Slc30a3 solute carrier family 30 (zinc transporter), member 3 protein_coding Mus_musculus

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