C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 30 (zinc transporter), member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029151 Slc30a3 10090 - 5:31086106-31108237 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031037 Slc30a3-001 31086106-31093615 protein_coding
  ENSMUST00000182290 Slc30a3-006 31087399-31088356 protein_coding
  ENSMUST00000182364 Slc30a3-005 31088782-31093469 nonsense_mediated_decay
  ENSMUST00000182444 Slc30a3-002 31086106-31108237 protein_coding
  ENSMUST00000182672 Slc30a3-004 31089341-31094801 protein_coding
  ENSMUST00000182776 Slc30a3-003 31089377-31108218 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031037ENSMUST00000182290ENSMUST00000182444ENSMUST00000182672ENSMUST00000182776
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031037 N/A N/A N/A 9.076±4.32 N/A N/A 0.013±0.00 0.076±0.01 0.179±0.11 N/A 0.041±0.00 1.541±0.41 0.250±0.13 N/A
ENSMUST00000182290 N/A N/A N/A 19.733±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182444 0.031±0.00 0.018±0.00 0.010±0.01 N/A 0.082±0.04 0.047±0.02 0.058±0.03 0.060±0.03 0.145±0.06 0.033±0.02 N/A N/A N/A 51.399±27.39
ENSMUST00000182672 N/A N/A N/A N/A N/A N/A 0.116±0.00 N/A N/A N/A 0.112±0.00 N/A N/A N/A
ENSMUST00000182776 N/A N/A N/A N/A N/A N/A N/A 0.082±0.02 N/A N/A N/A N/A 0.225±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EG CIL_0000EG_0002 CGP 5:31054780-31108237
CIL_0000EF CIL_0000EF_0002 CGP 5:31086106-31112526

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005770 IEA late endosome
GO:0006829 TAS zinc ion transport
GO:0008324 IEA cation transmembrane transporter activity
GO:0010312 TAS detoxification of zinc ion
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0030672 IDA synaptic vesicle membrane
GO:0032119 TAS sequestering of zinc ion
GO:0043005 IDA neuron projection
GO:0051050 IGI positive regulation of transport
GO:0061088 TAS regulation of sequestering of zinc ion
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021305 slc30a2 solute carrier family 30 (zinc transporter), member 2 protein_coding Danio_rerio
ENSG00000115194 SLC30A3 solute carrier family 30 (zinc transporter), member 3 protein_coding Homo_sapiens

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