C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 30 (zinc transporter), member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000233535 SLC30A3-001 ENSG00000115194 9606 - 2:27254572-27263259 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainHeartOvaryPlacentaTestisENST00000233535
Transcript ID Adrenal Brain Heart Ovary Placenta Testis
ENST00000233535 0.636±0.00 7.154±0.00 1.011±0.89 0.085±0.00 0.036±0.00 26.270±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EG CIL_0000EG_0001 CGP 2:27217390-27275817
CIL_0000EF CIL_0000EF_0001 CGP 2:27253684-27281499

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0005768 TAS endosome
GO:0005770 IDA late endosome
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS transport
GO:0006812 IEA cation transport
GO:0008021 TAS synaptic vesicle
GO:0008324 IEA cation transmembrane transporter activity
GO:0015633 TAS zinc transporting ATPase activity
GO:0016020 TAS membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0030672 IEA synaptic vesicle membrane
GO:0043005 ISS neuron projection
GO:0051050 IEA positive regulation of transport
GO:0055085 TAS:IEA transmembrane transport
GO:0061088 IDA regulation of sequestering of zinc ion
GO:0071577 TAS zinc ion transmembrane transport
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031037 Slc30a3-001 protein_coding Mus_musculus 0 1528
ENSMUST00000182444 Slc30a3-002 protein_coding Mus_musculus 0 1264
ENSMUST00000182672 Slc30a3-004 protein_coding Mus_musculus 0 529
ENSMUST00000182776 Slc30a3-003 protein_coding Mus_musculus 0 484
ENSMUST00000182364 Slc30a3-005 nonsense_mediated_decay Mus_musculus 0 257

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