C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: grancalcin, EF-hand calcium binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115271 GCA 9606 + 2:162318840-162371595 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000233612 GCA-003 162344338-162361122 protein_coding
  ENST00000414723 GCA-010 162356438-162371595 protein_coding
  ENST00000429691 GCA-012 162319034-162361098 protein_coding
  ENST00000437150 GCA-001 162344088-162361420 protein_coding
  ENST00000446271 GCA-011 162318884-162356813 protein_coding
  ENST00000453113 GCA-014 162344135-162356905 protein_coding
  ENST00000473240 GCA-013 162318840-162356834 processed_transcript
  ENST00000479199 GCA-007 162344182-162356981 retained_intron
  ENST00000481161 GCA-006 162344134-162356665 retained_intron
  ENST00000487445 GCA-008 162344159-162360971 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000233612ENST00000414723ENST00000429691ENST00000437150ENST00000453113ENST00000479199ENST00000481161ENST00000487445
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000233612 7.842±0.00 6.773±0.00 N/A 5.695±0.00 2.363±0.00 2.329±0.00 1.500±0.00 3.391±1.93 2.574±0.00 4.885±2.71 0.647±0.00 3.245±1.52 4.328±1.26 6.157±0.34
ENST00000414723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.025±0.00
ENST00000429691 N/A N/A 1.476±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437150 2.565±0.00 2.652±0.00 0.554±0.00 4.213±1.68 1.980±0.07 1.122±0.00 1.039±0.48 3.272±0.00 0.847±0.18 3.862±0.39 N/A 1.975±0.55 3.139±0.23 2.563±0.00
ENST00000453113 N/A N/A N/A N/A 3.220±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479199 N/A N/A 3.850±0.00 16.989±0.00 N/A 4.943±0.00 N/A 7.550±0.00 N/A 19.318±0.00 1.161±0.72 9.947±3.34 7.467±3.58 N/A
ENST00000481161 N/A N/A N/A N/A N/A N/A 0.778±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000487445 N/A 1.735±0.00 N/A 1.869±0.00 N/A N/A N/A 1.156±0.00 0.553±0.02 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KY CIL_0005KY_0001 CGP 2:162267079-162371595
CIL_0005KR CIL_0005KR_0001 CGP 2:162318840-162838730

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004198 IBA calcium-dependent cysteine-type endopeptidase activity
GO:0005509 IEA calcium ion binding
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006508 IBA proteolysis
GO:0042803 IPI protein homodimerization activity
GO:0046982 IPI protein heterodimerization activity
GO:0061025 TAS membrane fusion
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020187 GCA grancalcin, EF-hand calcium binding protein protein_coding Danio_rerio
ENSMUSG00000026893 Gca grancalcin protein_coding Mus_musculus

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