C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spectrin, beta, non-erythrocytic 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115306 SPTBN1 9606 + 2:54456285-54671445 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000333896 SPTBN1-002 54558394-54662308 protein_coding
  ENST00000356805 SPTBN1-001 54456285-54669675 protein_coding
  ENST00000389980 SPTBN1-003 54457261-54629204 protein_coding
  ENST00000467371 SPTBN1-005 54662901-54669674 retained_intron
  ENST00000496323 SPTBN1-004 54652518-54660290 retained_intron
  ENST00000602898 SPTBN1-006 54515744-54528715 retained_intron
  ENST00000615901 SPTBN1-201 54456317-54671445 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000333896ENST00000356805ENST00000467371
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000333896 N/A 6.812±0.00 5.735±0.00 N/A 8.104±0.00 6.705±0.00 16.385±6.27 N/A N/A 19.984±0.00 2.222±0.00 20.563±7.92 N/A N/A
ENST00000356805 154.944±0.00 47.300±0.00 17.450±0.00 79.464±41.08 154.705±129.34 47.989±29.92 14.642±2.85 38.989±11.69 29.013±3.41 79.333±49.01 5.366±1.29 54.999±30.33 39.266±11.52 74.669±37.93
ENST00000467371 N/A 14.928±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.018±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000281 IMP mitotic cytokinesis
GO:0003779 IEA actin binding
GO:0005200 IMP:IEA structural constituent of cytoskeleton
GO:0005515 IPI:IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005543 IEA phospholipid binding
GO:0005634 IEA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005886 IEA plasma membrane
GO:0007009 IMP plasma membrane organization
GO:0007182 IEA common-partner SMAD protein phosphorylation
GO:0007184 IEA SMAD protein import into nucleus
GO:0007411 TAS axon guidance
GO:0008091 IEA spectrin
GO:0014731 NAS spectrin-associated cytoskeleton
GO:0016020 IEA membrane
GO:0030506 IPI ankyrin binding
GO:0030673 ISS axolemma
GO:0030863 IEA cortical cytoskeleton
GO:0031430 IEA M band
GO:0032403 IEA protein complex binding
GO:0032437 IEA cuticular plate
GO:0043001 IMP Golgi to plasma membrane protein transport
GO:0043234 IEA protein complex
GO:0044822 IDA poly(A) RNA binding
GO:0051693 IEA actin filament capping
GO:0070062 IDA extracellular vesicular exosome
GO:0071709 IMP membrane assembly
GO:0072661 IMP protein targeting to plasma membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036402 spectrin, beta, non-erythrocytic 1 protein_coding Danio_rerio
ENSDARG00000079113 CABZ01070007.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000020315 Sptbn1 spectrin beta, non-erythrocytic 1 protein_coding Mus_musculus

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