C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spectrin beta, non-erythrocytic 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020315 Sptbn1 10090 - 11:30099395-30268175 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000006629 Sptbn1-001 30099395-30268169 protein_coding
  ENSMUST00000011877 Sptbn1-201 30099396-30219772 protein_coding
  ENSMUST00000102838 Sptbn1-002 30106785-30198257 protein_coding
  ENSMUST00000124231 Sptbn1-007 30109948-30267214 protein_coding
  ENSMUST00000127209 Sptbn1-004 30109871-30111359 retained_intron
  ENSMUST00000133466 Sptbn1-003 30101513-30105610 retained_intron
  ENSMUST00000145315 Sptbn1-005 30099396-30103249 retained_intron
  ENSMUST00000149117 Sptbn1-006 30216659-30268175 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006629ENSMUST00000011877ENSMUST00000102838ENSMUST00000124231ENSMUST00000145315ENSMUST00000149117
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006629 20.994±4.73 27.459±4.49 N/A 27.062±28.69 8.653±3.32 5.911±0.92 N/A 11.980±1.94 1.391±0.20 35.387±8.40 4.455±1.28 17.141±10.32 14.555±6.90 1.917±0.00
ENSMUST00000011877 65.396±23.24 N/A 53.900±1.73 33.874±13.90 23.493±8.42 18.183±2.86 37.938±0.35 43.550±3.65 3.586±1.42 116.196±10.41 9.020±1.27 29.712±24.56 28.230±7.27 4.487±0.88
ENSMUST00000102838 N/A N/A N/A N/A N/A N/A 13.639±0.60 N/A 0.805±0.00 N/A 1.987±0.31 9.046±2.97 7.643±1.50 N/A
ENSMUST00000124231 N/A N/A N/A 140.620±0.00 N/A N/A N/A N/A N/A N/A N/A 90.309±0.00 26.061±1.92 21.373±0.00
ENSMUST00000145315 N/A N/A N/A 9.740±0.00 18.606±0.00 N/A N/A N/A 3.355±0.00 N/A N/A N/A N/A N/A
ENSMUST00000149117 N/A 20.812±2.17 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000281 IEA mitotic cytokinesis
GO:0003779 IEA actin binding
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005516 IEA calmodulin binding
GO:0005543 IEA phospholipid binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0007009 IEA plasma membrane organization
GO:0007182 IDA common-partner SMAD protein phosphorylation
GO:0007184 IDA SMAD protein import into nucleus
GO:0008091 IEA spectrin
GO:0016020 IDA membrane
GO:0030506 IEA ankyrin binding
GO:0030673 IDA axolemma
GO:0030863 IDA cortical cytoskeleton
GO:0031430 IDA M band
GO:0032403 IEA protein complex binding
GO:0032437 IDA cuticular plate
GO:0043001 IEA Golgi to plasma membrane protein transport
GO:0043234 IEA protein complex
GO:0044822 IEA poly(A) RNA binding
GO:0051693 IEA actin filament capping
GO:0070062 IEA extracellular vesicular exosome
GO:0071709 IEA membrane assembly
GO:0072661 IMP protein targeting to plasma membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036402 spectrin, beta, non-erythrocytic 1 protein_coding Danio_rerio
ENSDARG00000079113 CABZ01070007.1 Uncharacterized protein protein_coding Danio_rerio
ENSG00000115306 SPTBN1 spectrin, beta, non-erythrocytic 1 protein_coding Homo_sapiens

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