C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin, beta, non-erythrocytic 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000356805 SPTBN1-001 ENSG00000115306 9606 + 2:54456285-54669675 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356805
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356805 154.944±0.00 47.300±0.00 17.450±0.00 79.464±41.08 154.705±129.34 47.989±29.92 14.642±2.85 38.989±11.69 29.013±3.41 79.333±49.01 5.366±1.29 54.999±30.33 39.266±11.52 74.669±37.93

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000281 IMP mitotic cytokinesis
GO:0003779 IEA actin binding
GO:0005200 IMP:IEA structural constituent of cytoskeleton
GO:0005515 IPI:IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005543 IEA phospholipid binding
GO:0005634 IEA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005886 IEA plasma membrane
GO:0007009 IMP plasma membrane organization
GO:0007182 IEA common-partner SMAD protein phosphorylation
GO:0007184 IEA SMAD protein import into nucleus
GO:0007411 TAS axon guidance
GO:0008091 IEA spectrin
GO:0014731 NAS spectrin-associated cytoskeleton
GO:0016020 IEA membrane
GO:0030506 IPI ankyrin binding
GO:0030673 ISS axolemma
GO:0030863 IEA cortical cytoskeleton
GO:0031430 IEA M band
GO:0032403 IEA protein complex binding
GO:0032437 IEA cuticular plate
GO:0043001 IMP Golgi to plasma membrane protein transport
GO:0043234 IEA protein complex
GO:0044822 IDA poly(A) RNA binding
GO:0051693 IEA actin filament capping
GO:0070062 IDA extracellular vesicular exosome
GO:0071709 IMP membrane assembly
GO:0072661 IMP protein targeting to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006629 Sptbn1-001 protein_coding Mus_musculus 0 9705
ENSMUST00000011877 Sptbn1-201 protein_coding Mus_musculus 0 9428
ENSMUST00000124231 Sptbn1-007 protein_coding Mus_musculus 0 8349
ENSMUST00000102838 Sptbn1-002 protein_coding Mus_musculus 0 8242
ENSDART00000098492 protein_coding Danio_rerio 0 2656
ENSMUST00000145315 Sptbn1-005 retained_intron Mus_musculus 0 1214
ENSMUST00000166101 Sptb-002 protein_coding Mus_musculus 0 942
ENSMUST00000021458 Sptb-001 protein_coding Mus_musculus 0 942
ENSMUST00000149117 Sptbn1-006 retained_intron Mus_musculus 0 553
ENSMUST00000172269 Sptbn4-201 protein_coding Mus_musculus 0 551
ENSMUST00000011895 Sptbn4-001 protein_coding Mus_musculus 0 551
ENSMUST00000133466 Sptbn1-003 retained_intron Mus_musculus 0 477
ENSMUST00000127209 Sptbn1-004 retained_intron Mus_musculus 0 379

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