C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 34
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115464 USP34 9606 - 2:61187463-61470769 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000398571 USP34-001 61187463-61470769 protein_coding
  ENST00000411912 USP34-002 61187463-61241614 protein_coding
  ENST00000436269 USP34-005 61187550-61204330 protein_coding
  ENST00000453133 USP34-008 61348272-61470690 nonsense_mediated_decay
  ENST00000453734 USP34-006 61226788-61280333 protein_coding
  ENST00000460004 USP34-010 61339575-61348028 processed_transcript
  ENST00000463046 USP34-003 61189277-61256886 retained_intron
  ENST00000467128 USP34-022 61206788-61214663 processed_transcript
  ENST00000468703 USP34-026 61222632-61223255 retained_intron
  ENST00000472689 USP34-009 61208899-61222685 processed_transcript
  ENST00000472706 USP34-012 61214600-61301032 processed_transcript
  ENST00000476716 USP34-021 61204527-61220368 processed_transcript
  ENST00000482250 USP34-018 61220405-61222975 retained_intron
  ENST00000483672 USP34-019 61220193-61221601 retained_intron
  ENST00000484179 USP34-014 61265585-61281151 retained_intron
  ENST00000487547 USP34-016 61221559-61223661 retained_intron
  ENST00000490527 USP34-017 61214627-61221845 retained_intron
  ENST00000490552 USP34-004 61189454-61191349 retained_intron
  ENST00000492604 USP34-025 61188474-61189796 processed_transcript
  ENST00000492882 USP34-015 61265266-61266039 retained_intron
  ENST00000494867 USP34-013 61277702-61281139 retained_intron
  ENST00000498268 USP34-024 61190627-61193365 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000398571ENST00000411912ENST00000436269ENST00000453734
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000398571 5.895±0.00 4.734±0.00 3.113±0.00 5.220±0.32 4.737±0.28 6.273±4.08 7.867±0.00 3.011±0.86 4.135±2.76 5.255±2.35 3.106±0.85 5.076±2.09 0.924±0.25 5.196±1.51
ENST00000411912 5.143±0.00 7.546±0.00 N/A 5.019±0.00 6.012±0.00 N/A N/A 6.526±0.00 1.861±0.00 4.919±0.00 3.543±0.00 8.522±0.13 1.561±0.54 8.281±0.00
ENST00000436269 N/A 22.877±0.00 N/A N/A 12.777±0.00 9.697±0.00 N/A 14.187±0.00 5.927±0.00 12.499±0.00 5.005±0.00 24.582±6.82 5.024±2.02 26.661±5.99
ENST00000453734 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.450±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004197 IMP cysteine-type endopeptidase activity
GO:0004221 IDA ubiquitin thiolesterase activity
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0016055 IEA Wnt signaling pathway
GO:0016579 IDA protein deubiquitination
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0071108 IDA protein K48-linked deubiquitination
GO:0090263 IDA positive regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000056342 Usp34 ubiquitin specific peptidase 34 protein_coding Mus_musculus

Loading