C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ST3 beta-galactoside alpha-2,3-sialyltransferase 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115525 ST3GAL5 9606 - 2:85839144-85889014 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306262 ST3GAL5-012 85846494-85888911 nonsense_mediated_decay
  ENST00000377332 ST3GAL5-001 85839144-85889014 protein_coding
  ENST00000393805 ST3GAL5-003 85839144-85887549 protein_coding
  ENST00000393808 ST3GAL5-002 85839144-85867654 protein_coding
  ENST00000433665 ST3GAL5-006 85848151-85888986 nonsense_mediated_decay
  ENST00000455892 ST3GAL5-004 85848021-85888386 protein_coding
  ENST00000461199 ST3GAL5-008 85852908-85888910 processed_transcript
  ENST00000461206 ST3GAL5-013 85839149-85849576 retained_intron
  ENST00000461892 ST3GAL5-007 85852860-85888908 processed_transcript
  ENST00000473122 ST3GAL5-010 85851508-85888877 processed_transcript
  ENST00000484728 ST3GAL5-011 85860922-85888911 processed_transcript
  ENST00000487896 ST3GAL5-009 85851420-85853113 processed_transcript
  ENST00000490946 ST3GAL5-005 85863362-85866200 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000306262ENST00000377332ENST00000393805ENST00000393808ENST00000433665ENST00000461206ENST00000461892ENST00000473122ENST00000484728ENST00000490946
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000306262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.291±0.00 N/A N/A
ENST00000377332 8.235±0.00 4.897±0.00 N/A 11.419±8.83 2.278±0.00 4.965±0.00 N/A 2.131±0.18 3.045±0.00 4.049±2.85 1.228±0.00 2.657±0.51 6.230±1.20 6.267±0.52
ENST00000393805 N/A N/A 0.061±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.164±0.00 N/A N/A
ENST00000393808 N/A N/A N/A 4.525±0.00 N/A N/A 0.497±0.00 N/A 0.968±0.00 N/A N/A 2.068±1.55 5.747±1.14 2.168±0.00
ENST00000433665 N/A N/A 0.162±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461206 1.123±0.00 1.139±0.00 0.119±0.00 N/A 0.252±0.00 N/A N/A N/A N/A N/A 0.204±0.00 0.086±0.00 N/A 0.449±0.00
ENST00000461892 N/A N/A N/A N/A N/A N/A N/A 2.774±0.00 N/A N/A N/A N/A N/A N/A
ENST00000473122 N/A N/A N/A N/A N/A N/A N/A 2.655±0.00 N/A N/A N/A N/A N/A N/A
ENST00000484728 N/A N/A N/A N/A N/A N/A 0.311±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000490946 N/A N/A 0.483±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WR CIL_0007WR_0001 VISTA 2:85469895-86073896
CIL_00084P CIL_00084P_0001 VISTA 2:85470344-86073882

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 NAS Golgi membrane
GO:0001574 NAS ganglioside biosynthetic process
GO:0004513 TAS neolactotetraosylceramide alpha-2,3-sialyltransferase activity
GO:0005887 TAS integral component of plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0006486 IEA protein glycosylation
GO:0006688 TAS glycosphingolipid biosynthetic process
GO:0008373 TAS:IEA sialyltransferase activity
GO:0016021 TAS integral component of membrane
GO:0030173 IEA integral component of Golgi membrane
GO:0047291 IDA lactosylceramide alpha-2,3-sialyltransferase activity
GO:0097503 IEA sialylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037556 st3gal5 ST3 beta-galactoside alpha-2,3-sialyltransferase 5 protein_coding Danio_rerio
ENSMUSG00000056091 St3gal5 ST3 beta-galactoside alpha-2,3-sialyltransferase 5 protein_coding Mus_musculus

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