C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ST3 beta-galactoside alpha-2,3-sialyltransferase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393808 ST3GAL5-002 ENSG00000115525 9606 - 2:85839144-85867654 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverOvaryPlacentaTestisENST00000393808
Transcript ID Brain Heart Liver Ovary Placenta Testis
ENST00000393808 4.525±0.00 0.497±0.00 0.968±0.00 2.068±1.55 5.747±1.14 2.168±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WR CIL_0007WR_0001 VISTA 2:85469895-86073896
CIL_00084P CIL_00084P_0001 VISTA 2:85470344-86073882

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 NAS Golgi membrane
GO:0001574 NAS ganglioside biosynthetic process
GO:0004513 TAS neolactotetraosylceramide alpha-2,3-sialyltransferase activity
GO:0005887 TAS integral component of plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0006486 IEA protein glycosylation
GO:0006688 TAS glycosphingolipid biosynthetic process
GO:0008373 TAS:IEA sialyltransferase activity
GO:0016021 TAS integral component of membrane
GO:0030173 IEA integral component of Golgi membrane
GO:0047291 IDA lactosylceramide alpha-2,3-sialyltransferase activity
GO:0097503 IEA sialylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114112 St3gal5-002 protein_coding Mus_musculus 0 1173
ENSMUST00000069994 St3gal5-001 protein_coding Mus_musculus 0 1173
ENSMUST00000187007 St3gal5-003 processed_transcript Mus_musculus 0 411

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