C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: hippocalcin-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115756 HPCAL1 9606 + 2:10302889-10427617 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000307845 HPCAL1-001 10302907-10427609 protein_coding
  ENST00000381765 HPCAL1-002 10303700-10427617 protein_coding
  ENST00000419810 HPCAL1-003 10324347-10427352 nonsense_mediated_decay
  ENST00000422133 HPCAL1-005 10420021-10427000 protein_coding
  ENST00000423674 HPCAL1-004 10302889-10419847 protein_coding
  ENST00000613496 HPCAL1-201 10368678-10427616 protein_coding
  ENST00000620771 HPCAL1-202 10368764-10427616 protein_coding
  ENST00000622018 HPCAL1-203 10330163-10427616 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000307845ENST00000381765ENST00000419810ENST00000613496ENST00000622018
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000307845 10.144±0.00 7.505±0.00 2.756±0.00 10.761±0.80 8.556±2.67 10.063±5.78 8.952±7.54 48.639±0.00 30.244±0.00 37.624±32.21 4.776±0.00 12.206±8.94 22.983±7.69 12.305±2.36
ENST00000381765 N/A N/A N/A N/A N/A 0.975±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000419810 N/A N/A N/A N/A N/A N/A 0.049±0.00 N/A N/A N/A N/A 0.626±0.44 N/A N/A
ENST00000613496 N/A 20.785±0.00 N/A 35.563±23.45 9.084±0.00 28.447±0.00 N/A N/A N/A N/A N/A N/A N/A 17.981±1.08
ENST00000622018 13.578±0.00 7.705±0.00 N/A N/A N/A N/A N/A N/A 2.976±0.00 N/A 2.103±0.00 17.377±1.44 32.457±7.21 7.736±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0007165 IEA signal transduction
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022763 HPCAL1 hippocalcin-like 1 protein_coding Danio_rerio
ENSMUSG00000071379 Hpcal1 hippocalcin-like 1 protein_coding Mus_musculus

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