C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hippocalcin-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000307845 HPCAL1-001 ENSG00000115756 9606 + 2:10302907-10427609 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000307845
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000307845 10.144±0.00 7.505±0.00 2.756±0.00 10.761±0.80 8.556±2.67 10.063±5.78 8.952±7.54 48.639±0.00 30.244±0.00 37.624±32.21 4.776±0.00 12.206±8.94 22.983±7.69 12.305±2.36

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0007165 IEA signal transduction
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071858 Hpcal1-201 protein_coding Mus_musculus 0 893
ENSMUST00000164649 Hpca-202 protein_coding Mus_musculus 0 697
ENSMUST00000030572 Hpca-201 protein_coding Mus_musculus 0 697
ENSMUST00000139450 Hpca-007 protein_coding Mus_musculus 0 697
ENSMUST00000116442 Hpca-005 protein_coding Mus_musculus 0 697
ENSMUST00000116444 Hpca-001 protein_coding Mus_musculus 0 697
ENSMUST00000095807 Hpca-002 protein_coding Mus_musculus 0 697
ENSMUST00000125931 Hpca-006 protein_coding Mus_musculus 0 676
ENSMUST00000149763 Hpca-003 protein_coding Mus_musculus 0 606
ENSMUST00000174304 Gm5977-001 transcribed_unprocessed_pseudogene Mus_musculus 0 571
ENSDART00000137236 HPCAL1-001 protein_coding Danio_rerio 0 560
ENSDART00000028471 HPCAL1-201 protein_coding Danio_rerio 0 558
ENSMUST00000174403 Gm20472-001 unprocessed_pseudogene Mus_musculus 0 538
ENSMUST00000072299 Vsnl1-201 protein_coding Mus_musculus 0 244

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