C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syndecan 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115884 SDC1 9606 - 2:20200797-20225433 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000254351 SDC1-001 20200797-20225112 protein_coding
  ENST00000381150 SDC1-201 20200799-20225433 protein_coding
  ENST00000403076 SDC1-002 20201486-20225096 protein_coding
  ENST00000429035 SDC1-005 20203818-20224280 protein_coding
  ENST00000447124 SDC1-004 20204152-20225094 nonsense_mediated_decay
  ENST00000482879 SDC1-006 20204002-20223388 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000254351ENST00000381150ENST00000403076ENST00000429035ENST00000447124
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000254351 1.782±0.00 6.305±0.00 8.482±0.00 0.232±0.00 4.300±0.07 4.680±3.02 0.060±0.00 97.597±29.70 72.129±62.52 16.741±5.72 0.240±0.00 24.070±17.83 51.120±28.31 1.259±0.00
ENST00000381150 N/A N/A N/A 0.330±0.00 N/A N/A N/A 18.307±0.00 12.903±10.11 17.045±0.00 N/A 4.021±1.54 N/A 2.084±1.14
ENST00000403076 N/A N/A N/A 0.077±0.00 N/A N/A 0.084±0.00 N/A N/A N/A 0.018±0.00 61.637±0.00 24.156±0.00 2.002±0.00
ENST00000429035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 85.074±0.00 N/A 3.062±0.00
ENST00000447124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.357±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0001657 IEA ureteric bud development
GO:0001948 IEA glycoprotein binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005796 TAS Golgi lumen
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005925 IDA focal adhesion
GO:0005975 TAS carbohydrate metabolic process
GO:0006024 TAS glycosaminoglycan biosynthetic process
GO:0006027 TAS glycosaminoglycan catabolic process
GO:0006954 IEA inflammatory response
GO:0007603 TAS phototransduction, visible light
GO:0008022 IPI protein C-terminus binding
GO:0008092 IEA cytoskeletal protein binding
GO:0009636 IEA response to toxic substance
GO:0009897 IEA external side of plasma membrane
GO:0009986 IDA cell surface
GO:0010033 IEA response to organic substance
GO:0016020 IEA membrane
GO:0030198 TAS extracellular matrix organization
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0042060 IEA wound healing
GO:0042157 TAS lipoprotein metabolic process
GO:0042476 IEA odontogenesis
GO:0042542 IEA response to hydrogen peroxide
GO:0043202 TAS lysosomal lumen
GO:0043234 IEA protein complex
GO:0044281 TAS small molecule metabolic process
GO:0048627 ISS myoblast development
GO:0051384 IEA response to glucocorticoid
GO:0051591 IEA response to cAMP
GO:0051592 IEA response to calcium ion
GO:0055002 IEP striated muscle cell development
GO:0060009 IEA Sertoli cell development
GO:0060070 IEA canonical Wnt signaling pathway
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000020592 Sdc1 syndecan 1 protein_coding Mus_musculus

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