C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syndecan 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000403076 SDC1-002 ENSG00000115884 9606 - 2:20201486-20225096 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartMuscleOvaryPlacentaTestisENST00000403076
Transcript ID Brain Heart Muscle Ovary Placenta Testis
ENST00000403076 0.077±0.00 0.084±0.00 0.018±0.00 61.637±0.00 24.156±0.00 2.002±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008092 IEA cytoskeletal protein binding
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020911 Sdc1-001 protein_coding Mus_musculus 0 390
ENSMUST00000171158 Sdc1-201 protein_coding Mus_musculus 0 346
ENSMUST00000159821 Sdc1-005 retained_intron Mus_musculus 0 274
ENSMUST00000161883 Sdc1-004 protein_coding Mus_musculus 0 211
ENSMUST00000160348 Sdc1-003 processed_transcript Mus_musculus 4e-33 147

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