C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syndecan 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020592 Sdc1 10090 + 12:8771323-8793715 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020911 Sdc1-001 8771323-8793715 protein_coding
  ENSMUST00000159821 Sdc1-005 8771324-8789883 retained_intron
  ENSMUST00000160348 Sdc1-003 8771803-8790448 processed_transcript
  ENSMUST00000161883 Sdc1-004 8771742-8790842 protein_coding
  ENSMUST00000171158 Sdc1-201 8771413-8793062 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020911ENSMUST00000161883ENSMUST00000171158
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020911 13.964±7.88 3.385±0.46 31.801±7.29 2.428±1.72 14.753±6.53 63.983±20.77 1.827±0.59 4.228±1.22 56.132±56.10 62.167±25.12 0.578±0.18 43.848±31.20 14.979±6.61 1.030±0.56
ENSMUST00000161883 N/A 2.957±0.71 N/A N/A 17.422±0.00 N/A N/A N/A N/A N/A 0.788±0.00 N/A N/A N/A
ENSMUST00000171158 6.111±4.25 1.511±0.39 15.393±0.00 2.549±1.69 5.437±1.02 25.231±3.04 0.606±0.23 2.204±0.08 18.069±16.55 20.329±0.00 0.490±0.21 33.328±3.68 40.011±33.11 0.688±0.35

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001657 IEA ureteric bud development
GO:0001948 IPI glycoprotein binding
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005737 IEA cytoplasm
GO:0005796 TAS Golgi lumen
GO:0005925 IEA focal adhesion
GO:0006954 IEA inflammatory response
GO:0008022 IEA protein C-terminus binding
GO:0008092 IEA cytoskeletal protein binding
GO:0009636 IEA response to toxic substance
GO:0009897 IDA external side of plasma membrane
GO:0009986 IDA cell surface
GO:0010033 IEA response to organic substance
GO:0016021 IEA integral component of membrane
GO:0042060 IEA wound healing
GO:0042476 IEA odontogenesis
GO:0042542 IEA response to hydrogen peroxide
GO:0043234 IEA protein complex
GO:0048627 IDA myoblast development
GO:0051384 IEA response to glucocorticoid
GO:0051591 IEA response to cAMP
GO:0051592 IEA response to calcium ion
GO:0055002 IEA striated muscle cell development
GO:0060009 IEA Sertoli cell development
GO:0060070 IMP canonical Wnt signaling pathway
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000115884 SDC1 syndecan 1 protein_coding Homo_sapiens

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